RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA656952" and tax_kingdom = "Pararnavirae"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA656952 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21024617 21024617 PRJNA656952_P_NODE_20237_length_303_cov_1.013043_g20050_i0 PRJNA656952 20237 303 1.013043 3.06952029 Gammaretrovirus murleu 3428959 Viruses Viruses 544 3.82e-150   NTclustered gi|37622930|gb|AY277737.1| 11786 g20050 i0 99.01 99.96699669967 303 3 100 0 1 303 2115 1813 Murine leukemia virus isolate Sp496-5Sb pol protein-like gene, partial sequence; and envelope protein gene, complete cds blastn 30290 544 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
28609468 28609468 PRJNA656952_P_NODE_25807_length_274_cov_2.079602_g25620_i0 PRJNA656952 25807 274 2.079602 5.69810948 Gammaretrovirus 153135 Viruses Viruses 190 6.6e-54   NR AAA79247.1 11786 g25620 i0 98.9 10.9598540145985 91 1 99.6 0 274 2 235 325 AAA79247.1 putative reverse transcriptase [Murine leukemia virus] diamond 3003 190 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
28925045 28925045 PRJNA656952_P_NODE_1908_length_713_cov_1.270312_g1765_i0 PRJNA656952 1908 713 1.270312 9.05732456 Gammaretrovirus 153135 Viruses Viruses 466 4.059999999999999e-153   NR NP_040333.1 11795 g1765 i0 97 4.9859747545582 237 7 99.7 0 713 3 497 733 NP_040333.1 RNA-dependent DNA polymerase, partial [Friend murine leukemia virus] diamond 3555 470 0.991489361702128 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;