RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA656952", tax_kingdom = "Bacillati" and tax_phylum = "Chloroflexota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

  • Bacillati · 4 ✖

bioproject 1

  • PRJNA656952 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
622189 622189 PRJNA656952_P_NODE_25421_length_276_cov_1.517241_g25234_i0 PRJNA656952 25421 276 1.517241 4.18758516 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 427 3.61e-115   NTclustered gi|2874254066|emb|OY970149.1| 1672391 g25234 i0 94.565 108.31884057971 276 15 100 0 1 276 565316 565591 MAG: uncultured Chloroflexia bacterium isolate MFD05747.bin.c.2 genome assembly, chromosome: 1 blastn 29896 427 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
28546576 28546576 PRJNA656952_P_NODE_7807_length_430_cov_0.918768_g7620_i0 PRJNA656952 7807 430 0.918768 3.9507024 Oscillochloris 104175 Bacteria Bacteria 47 0.00835   NR NMD30575.1 2026724 g7620 i0 33.7 3.90697674418605 83 39 57.9 2 38 286 398 464 NMD30575.1 transporter [Chloroflexota bacterium] diamond 1680 47 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
29986566 29986566 PRJNA656952_P_NODE_43611_length_241_cov_0.916667_g43424_i0 PRJNA656952 43611 241 0.916667 2.20916747 Candidatus Limnocylindrales bacterium 2952938 Bacteria Bacteria 108 3.45e-25   NR HYO41900.1 2952938 g43424 i0 68.8 1.91701244813278 77 24 95.9 0 2 232 72 148 HYO41900.1 FtsX-like permease family protein [Candidatus Limnocylindrales bacterium] diamond 462 108 1 Bacteria   Bacillati Chloroflexota Candidatus Limnocylindria Candidatus Limnocylindrales     Candidatus Limnocylindrales bacterium
31471992 31471992 PRJNA656952_P_NODE_15016_length_339_cov_1.157895_g14829_i0 PRJNA656952 15016 339 1.157895 3.92526405 Chloroflexota bacterium 2026724 Bacteria Bacteria 42.4 0.0332   NR MCY4475999.1 2026724 g14829 i0 35.2 0.805309734513274 91 55 80.5 3 335 63 14 100 MCY4475999.1 hypothetical protein [Chloroflexota bacterium] diamond 273 42.4 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;