RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA656952" and tax_clade = "Sar"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 3

analysis 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA656952 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9550907 9550907 PRJNA656952_P_NODE_29588_length_257_cov_1.641304_g29401_i0 PRJNA656952 29588 257 1.641304 4.21815128 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 137 6.27e-28   NTclustered gi|2795039278|ref|XM_067938479.1| 4785 g29401 i0 82.692 4.98832684824903 156 25 60 2 86 240 81 235 Phytophthora cinnamomi iron sulfur cluster assembly protein 1 (IUM83_13781), partial mRNA blastn 1282 137 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
13376627 13376627 PRJNA656952_P_NODE_40371_length_244_cov_0.900585_g40184_i0 PRJNA656952 40371 244 0.900585 2.1974274 Paramecium tetraurelia 5888 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.022   NTclustered gi|145519414|ref|XM_001445537.1| 5888 g40184 i0 100 0.114754098360656 28 0 11 0 48 75 299 272 Paramecium tetraurelia uncharacterized protein (GSPATT00013624001), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
24848960 24848960 PRJNA656952_P_NODE_44600_length_228_cov_2.129032_g44413_i0 PRJNA656952 44600 228 2.129032 4.85419296 Eimeria maxima 5804 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.02   NTclustered gi|915124244|ref|XM_013477932.1| 5804 g44413 i0 100 0.12280701754386 28 0 12 0 193 220 84 57 Eimeria maxima hypothetical protein, conserved partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria maxima
29796925 29796925 PRJNA656952_P_NODE_44251_length_241_cov_0.916667_g44064_i0 PRJNA656952 44251 241 0.916667 2.20916747 Ichthyophthirius multifiliis 5932 SAR_Eukaryotes SAR_Eukaryotes 79 4.87e-15   NR XP_004029943.1 5932 g44064 i0 50.7 0.933609958506224 75 36 92.1 1 230 9 281 355 XP_004029943.1 mitogen-activated protein kinase 3, putative [Ichthyophthirius multifiliis] diamond 225 79 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
31503609 31503609 PRJNA656952_P_NODE_34116_length_249_cov_0.875000_g33929_i0 PRJNA656952 34116 249 0.875 2.17875 Cafeteria roenbergensis 33653 SAR_Eukaryotes SAR_Eukaryotes 57.8 1.93e-7   NR KAA0173044.1 33653 g33929 i0 62.2 0.542168674698795 45 16 54.2 1 68 202 144 187 KAA0173044.1 hypothetical protein FNF27_05535 [Cafeteria roenbergensis] diamond 135 57.8 1 Eukaryota Sar     Bigyra Bicosoecida Cafeteriaceae Cafeteria Cafeteria roenbergensis
31629984 31629984 PRJNA656952_P_NODE_32716_length_250_cov_0.870056_g32529_i0 PRJNA656952 32716 250 0.870056 2.17514 Durusdinium trenchii 1381693 SAR_Eukaryotes SAR_Eukaryotes 41.6 0.0352   NR CAK9002244.1 1381693 g32529 i0 38 0.6 50 31 60 0 207 58 7 56 CAK9002244.1 Protein TANC1 (Tetratricopeptide repeat, partial [Durusdinium trenchii] diamond 150 41.6 1 Eukaryota Sar     Dinophyceae Suessiales Symbiodiniaceae Durusdinium Durusdinium trenchii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;