RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA656952", tax_clade = "FCB group" and tax_phylum = "Ignavibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA656952 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30144170 30144170 PRJNA656952_P_NODE_36692_length_247_cov_0.885057_g36505_i0 PRJNA656952 36692 247 0.885057 2.18609079 Ignavibacteria bacterium 2053306 Bacteria Bacteria 61.6 8.56e-9   NR MDD5363386.1 2053306 g36505 i0 54.2 2.34412955465587 48 22 58.3 0 239 96 903 950 MDD5363386.1 hypothetical protein [Ignavibacteria bacterium] diamond 579 61.6 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
30713218 30713218 PRJNA656952_P_NODE_41954_length_242_cov_1.585799_g41767_i0 PRJNA656952 41954 242 1.585799 3.83763358 Ignavibacteriaceae bacterium 2651163 Bacteria Bacteria 111 3.07e-29   NR HEY6437919.1 2651163 g41767 i0 65 0.991735537190083 80 28 99.2 0 3 242 3 82 HEY6437919.1 hypothetical protein [Ignavibacteriaceae bacterium] diamond 240 111 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae   Ignavibacteriaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;