RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA656952", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Portnoyibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Portnoyibacteriota · 1 ✖

tax_clade 1

  • Bacteria candidate phyla · 1 ✖

bioproject 1

  • PRJNA656952 · 1 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29367322 29367322 PRJNA656952_P_NODE_30929_length_251_cov_1.426966_g30742_i0 PRJNA656952 30929 251 1.426966 3.58168466 Bacteria 2 Bacteria Bacteria 68.6 3.42e-11   NR PIU75310.1 1974809 g30742 i0 44.3 2.71314741035857 79 44 94.4 0 2 238 553 631 PIU75310.1 MAG: hypothetical protein COS76_01435 [Candidatus Portnoybacteria bacterium CG06_land_8_20_14_3_00_39_12] diamond 681 68.9 0.995645863570392 Bacteria Bacteria candidate phyla   Candidatus Portnoyibacteriota         Candidatus Portnoybacteria bacterium CG06_land_8_20_14_3_00_39_12

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;