RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA645397", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA645397 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6262871 6262871 PRJNA645397_P_NODE_8705_length_174_cov_1.080000_g8632_i0 PRJNA645397 8705 174 1.08 1.8792 Mycoplasma 2093 Bacteria Bacteria 320 3.63e-83   NTclustered gi|2294785939|gb|CP103424.1| 51364 g8632 i0 100 190.913793103448 173 0 99 0 2 174 270944 270772 Mycoplasma cottewii strain VIS chromosome, complete genome blastn 33219 320 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma cottewii
10087679 10087679 PRJNA645397_P_NODE_7628_length_187_cov_1.507246_g7555_i0 PRJNA645397 7628 187 1.507246 2.81855002 Mycoplasma 2093 Bacteria Bacteria 346 6.56e-91   NTclustered gi|54609775|gb|AY765214.1| 51364 g7555 i0 100 188 187 0 100 0 1 187 574 388 Mycoplasma cottewii strain ATCC 43093 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 35156 346 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma cottewii
25385589 25385589 PRJNA645397_P_NODE_7560_length_188_cov_1.489209_g7487_i0 PRJNA645397 7560 188 1.489209 2.79971292 Mycoplasma 2093 Bacteria Bacteria 335 1.4299999999999995e-87   NTclustered gi|54609775|gb|AY765214.1| 51364 g7487 i0 98.93 187.686170212766 187 2 99 0 2 188 732 546 Mycoplasma cottewii strain ATCC 43093 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 35285 335 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma cottewii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;