RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA645397" and tax_clade = "PVC group"

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analysis 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA645397 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12099021 12099021 PRJNA645397_P_NODE_9890_length_166_cov_1.094017_g9817_i0 PRJNA645397 9890 166 1.094017 1.81606822 Phycisphaerae bacterium 2026778 Bacteria Bacteria 222 1e-53   NTclustered gi|2621780281|emb|OY776568.1| 2026778 g9817 i0 92.308 27.2951807228916 156 12 94 0 4 159 4345040 4344885 MAG: Phycisphaerae bacterium isolate 383648cc-b706-4f19-8acf-b8ba9176e0b9 genome assembly, chromosome: 1 blastn 4531 222 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae       Phycisphaerae bacterium
31377033 31377033 PRJNA645397_S_NODE_1476_length_165_cov_1.172414_g1474_i0 PRJNA645397 1476 165 1.172414 1.9344831 Prosthecobacter sp. 1965333 Bacteria Bacteria 99.8 4.7299999999999996e-23   NR WP_294388603.1 1965333 g1474 i0 94.2 1.85454545454545 52 3 94.5 0 3 158 254 305 WP_294388603.1 type II secretion system F family protein [Prosthecobacter sp.] diamond 306 99.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;