RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

18 rows where bioproject = "PRJNA643700" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Archaea · 18 ✖

bioproject 1

  • PRJNA643700 · 18 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
618213 618213 PRJNA643700_P_NODE_38401_length_659_cov_2.103279_g37049_i0 PRJNA643700 38401 659 2.103279 13.86060861 uncultured marine thaumarchaeote KM3_181_G03 1456065 Archaea Archaea 54.7 0.018   NTclustered gi|663514778|gb|KF900735.1| 1456065 g37049 i0 100 0.0440060698027314 29 0 4 0 413 441 32363 32391 Uncultured marine thaumarchaeote KM3_181_G03 genomic sequence blastn 29 54.7 1 Archaea   Thermoproteati Nitrososphaerota         uncultured marine thaumarchaeote KM3_181_G03
4445739 4445739 PRJNA643700_P_NODE_160224_length_320_cov_1.151292_g158669_i0 PRJNA643700 160224 320 1.151292 3.6841344 Ignicoccus pacificus 114376 Archaea Archaea 52.8 0.03   NTclustered gi|2306405303|gb|CP006868.1| 940294 g158669 i0 100 0.0875 28 0 9 0 282 309 114131 114158 Ignicoccus pacificus DSM 13166, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Ignicoccus Ignicoccus pacificus
4445957 4445957 PRJNA643700_P_NODE_408904_length_165_cov_0.896552_g407348_i0 PRJNA643700 408904 165 0.896552 1.4793108 Methanobrevibacter olleyae 294671 Archaea Archaea 58.4 2.97e-4   NTclustered gi|998157363|gb|CP014265.1| 294671 g407348 i0 100 0.187878787878788 31 0 19 0 65 95 382332 382362 Methanobrevibacter olleyae strain YLM1 chromosome, complete genome blastn 31 58.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter olleyae
6996658 6996658 PRJNA643700_P_NODE_203606_length_275_cov_1.840708_g202050_i0 PRJNA643700 203606 275 1.840708 5.061947 Methanobrevibacter arboriphilus 39441 Archaea Archaea 54.7 0.007   NTclustered gi|2047640843|dbj|AP019779.1| 39441 g202050 i0 100 0.105454545454545 29 0 11 0 62 90 2275136 2275108 Methanobrevibacter arboriphilus SA DNA, complete genome blastn 29 54.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter arboriphilus
6996874 6996874 PRJNA643700_P_NODE_413126_length_164_cov_1.191304_g411570_i0 PRJNA643700 413126 164 1.191304 1.95373856 Methanocaldococcus fervens 83171 Archaea Archaea 52.8 0.014   NTclustered gi|256793173|gb|CP001696.1| 573064 g411570 i0 100 0.170731707317073 28 0 17 0 92 119 1360328 1360355 Methanocaldococcus fervens AG86, complete genome blastn 28 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus fervens
10822495 10822495 PRJNA643700_P_NODE_400689_length_166_cov_2.487179_g399133_i0 PRJNA643700 400689 166 2.487179 4.12871714 Methanobacterium sp. BAmetb5 2025351 Archaea Archaea 52.8 0.014   NTclustered gi|1473089901|gb|CP022706.1| 2025351 g399133 i0 100 0.168674698795181 28 0 17 0 109 136 770463 770436 MAG: Methanobacterium sp. BAmetb5 chromosome, complete genome blastn 28 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp. BAmetb5
10822508 10822508 PRJNA643700_P_NODE_407269_length_165_cov_1.344828_g405713_i0 PRJNA643700 407269 165 1.344828 2.2189662 Acidianus sp. HS-5 2886040 Archaea Archaea 54.7 0.004   NTclustered gi|2152695168|dbj|AP025245.1| 2886040 g405713 i0 100 0.175757575757576 29 0 18 0 126 154 303660 303632 Acidianus sp. HS-5 DNA, complete genome blastn 29 54.7 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Acidianus Acidianus sp. HS-5
15187124 15187124 PRJNA643700_P_NODE_316692_length_201_cov_1.684211_g315136_i0 PRJNA643700 316692 201 1.684211 3.38526411 DHVE2 group 1803510 Archaea Archaea 58.4 3.76e-4   NTclustered gi|42557759|emb|AJ627422.1| 29281 g315136 i0 83.824 4.2636815920398 68 4 33 6 136 201 40861 40799 Uncultured crenarchaeote genomic fragment 54d9 blastn 857 58.4 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
16461412 16461412 PRJNA643700_P_NODE_248233_length_241_cov_1.078125_g246677_i0 PRJNA643700 248233 241 1.078125 2.59828125 Halalkalicoccus 332246 Archaea Archaea 351 1.91e-92   NTclustered gi|507148368|ref|NR_103171.1| 413810 g246677 i0 92.946 108.336099585062 241 17 100 0 1 241 1440 1680 Halalkalicoccus jeotgali strain B3 23S ribosomal RNA gene, complete sequence blastn 26109 351 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halalkalicoccus Halalkalicoccus jeotgali
19744901 19744901 PRJNA643700_P_NODE_118276_length_381_cov_1.825301_g116721_i0 PRJNA643700 118276 381 1.825301 6.95439681 uncultured Thermoplasmata archaeon 376542 Archaea Archaea 52.8 0.036   NTclustered gi|2874253895|emb|OY970070.1| 376542 g116721 i0 100 0.073490813648294 28 0 7 0 338 365 1484957 1484930 MAG: uncultured Thermoplasmata archaeon isolate MFD04408.bin.c.5 genome assembly, chromosome: 1 blastn 28 52.8 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       uncultured Thermoplasmata archaeon
26954520 26954520 PRJNA643700_P_NODE_183982_length_294_cov_1.114286_g182426_i0 PRJNA643700 183982 294 1.114286 3.27600084 Candidatus Aenigmatarchaeota archaeon 3121606 Archaea Archaea 43.9 0.0253   NR MFH1473347.1 3121606 g182426 i0 37 0.469387755102041 46 22 39.8 1 177 61 93 138 MFH1473347.1 hypothetical protein [Candidatus Aenigmatarchaeota archaeon] diamond 138 43.9 1 Archaea   Nanobdellati Candidatus Aenigmatarchaeota         Candidatus Aenigmatarchaeota archaeon
27618491 27618491 PRJNA643700_P_NODE_113564_length_389_cov_8.582353_g112010_i0 PRJNA643700 113564 389 8.582353 33.38535317 Promethearchaeota archaeon 2053489 Archaea Archaea 45.1 0.0261   NR TFG13158.1 2053489 g112010 i0 30.3 0.686375321336761 89 58 68.6 1 79 345 245 329 TFG13158.1 MAG: MFS transporter [Promethearchaeota archaeon] diamond 267 45.1 1 Archaea   Promethearchaeati Promethearchaeota         Promethearchaeota archaeon
28912632 28912632 PRJNA643700_P_NODE_225748_length_257_cov_1.389423_g224192_i0 PRJNA643700 225748 257 1.389423 3.57081711 Methanobacteriota archaeon 2026739 Archaea Archaea 42.7 0.0443   NR MBI4394391.1 2026739 g224192 i0 35.9 0.455252918287938 39 25 45.5 0 176 60 250 288 MBI4394391.1 ATP-dependent DNA helicase [Methanobacteriota archaeon] diamond 117 42.7 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
29304015 29304015 PRJNA643700_P_NODE_386429_length_169_cov_1.300000_g384873_i0 PRJNA643700 386429 169 1.3 2.197 Thermococcus 2263 Archaea Archaea 116 1.74e-28   NR WP_167728776.1 163002 g384873 i0 100 11.715976331360901 55 0 97.6 0 3 167 1753 1807 WP_167728776.1 DNA polymerase domain-containing protein [Thermococcus sp. 9N3] diamond 1980 116 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus sp. 9N3
29417941 29417941 PRJNA643700_P_NODE_172389_length_306_cov_1.416342_g170833_i0 PRJNA643700 172389 306 1.416342 4.33400652 archaeon 1906665 Archaea Archaea 45.1 0.00518   NR MDP1728636.1 1906665 g170833 i0 31.9 0.676470588235294 69 35 55.9 1 12 182 73 141 MDP1728636.1 TspO/MBR family protein [archaeon] diamond 207 45.1 1 Archaea               archaeon
31281850 31281850 PRJNA643700_P_NODE_303575_length_208_cov_1.283019_g302019_i0 PRJNA643700 303575 208 1.283019 2.66867952 Thermoplasmatota archaeon 2806419 Archaea Archaea 42.4 0.0322   NR MCL4325535.1 2806419 g302019 i0 35.5 0.894230769230769 62 38 86.5 1 18 197 1152 1213 MCL4325535.1 protease pro-enzyme activation domain-containing protein [Thermoplasmatota archaeon] diamond 186 42.4 1 Archaea   Methanobacteriati Thermoplasmatota         Thermoplasmatota archaeon
32420905 32420905 PRJNA643700_P_NODE_117799_length_382_cov_1.537538_g116244_i0 PRJNA643700 117799 382 1.537538 5.87339516 Candidatus Woesearchaeota archaeon 2026803 Archaea Archaea 43.1 0.0234   NR MBW2970944.1 2026803 g116244 i0 37 0.424083769633508 54 34 42.4 0 177 338 35 88 MBW2970944.1 hypothetical protein [Candidatus Woesearchaeota archaeon] diamond 162 43.1 1 Archaea   Nanobdellati Candidatus Woesearchaeota         Candidatus Woesearchaeota archaeon
32830926 32830926 PRJNA643700_P_NODE_268000_length_228_cov_1.178771_g266444_i0 PRJNA643700 268000 228 1.178771 2.68759788 Candidatus Micrarchaeia archaeon 3018267 Archaea Archaea 44.3 0.00896   NR MFA5382703.1 3018267 g266444 i0 29 0.815789473684211 62 44 81.6 0 9 194 597 658 MFA5382703.1 RHS repeat-associated core domain-containing protein [Candidatus Micrarchaeia archaeon] diamond 186 44.3 1 Archaea   Nanobdellati Candidatus Micrarchaeota Candidatus Micrarchaeia       Candidatus Micrarchaeia archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;