RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA643700" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA643700 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27694091 27694091 PRJNA643700_P_NODE_383004_length_170_cov_2.148760_g381448_i0 PRJNA643700 383004 170 2.14876 3.652892 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 43.5 0.00706   NR CCA18549.1 890382 g381448 i0 53.1 3.26470588235294 32 15 56.5 0 146 51 179 210 CCA18549.1 transposase putative [Albugo laibachii Nc14] diamond 555 43.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
31661346 31661346 PRJNA643700_P_NODE_151297_length_331_cov_1.804965_g149742_i0 PRJNA643700 151297 331 1.804965 5.9744341500000004 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 45.1 0.0148   NR XP_009535910.1 67593 g149742 i0 37.5 0.652567975830816 72 42 65.3 2 6 221 394 462 XP_009535910.1 hypothetical protein PHYSODRAFT_249859 [Phytophthora sojae] diamond 216 45.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;