RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA643700" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA643700 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27870840 27870840 PRJNA643700_P_NODE_221385_length_260_cov_2.298578_g219829_i0 PRJNA643700 221385 260 2.298578 5.9763028 Victivallaceae bacterium 2793042 Bacteria Bacteria 45.4 0.00518   NR MDD4180908.1 2793042 g219829 i0 42.5 0.461538461538462 40 22 45 1 201 85 32 71 MDD4180908.1 beta-galactosidase trimerization domain-containing protein [Victivallaceae bacterium] diamond 120 45.4 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales Victivallaceae   Victivallaceae bacterium
28628934 28628934 PRJNA643700_P_NODE_196427_length_282_cov_1.115880_g194871_i0 PRJNA643700 196427 282 1.11588 3.1467816 Lentisphaeria bacterium 2053569 Bacteria Bacteria 43.9 0.0198   NR MBR1965056.1 2053569 g194871 i0 32.3 0.659574468085106 62 42 66 0 51 236 15 76 MBR1965056.1 hypothetical protein [Lentisphaeria bacterium] diamond 186 43.9 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;