RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA643700", tax_kingdom = "Thermotogati" and tax_superkingdom = "Bacteria"

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tax_phylum 2

analysis 2

tax_superkingdom 1

  • Bacteria · 7 ✖

tax_kingdom 1

  • Thermotogati · 7 ✖

bioproject 1

  • PRJNA643700 · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4445762 4445762 PRJNA643700_P_NODE_200724_length_278_cov_1.270742_g199168_i0 PRJNA643700 200724 278 1.270742 3.53266276 Trueperaceae bacterium 2026798 Bacteria Bacteria 366 8.05e-97   NTclustered gi|2621701816|emb|OY759346.1| 2026798 g199168 i0 92.857 480.309352517986 252 18 91 0 27 278 3599936 3599685 MAG: Trueperaceae bacterium isolate dd143a13-9bf8-4812-ba0e-a3cf349d91ff genome assembly, chromosome: 1 blastn 133526 366 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae   Trueperaceae bacterium
7536530 7536530 PRJNA643700_P_NODE_264726_length_230_cov_1.187845_g263170_i0 PRJNA643700 264726 230 1.187845 2.7320435 Truepera 332248 Bacteria Bacteria 298 2.39e-76   NTclustered gi|470486385|ref|NR_076754.1| 332249 g263170 i0 95.676 643.834782608696 185 8 80 0 46 230 874 690 Truepera radiovictrix strain RQ-24 23S ribosomal RNA gene, complete sequence blastn 148082 298 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix
10087187 10087187 PRJNA643700_P_NODE_336308_length_192_cov_1.090909_g334752_i0 PRJNA643700 336308 192 1.090909 2.09454528 Truepera 332248 Bacteria Bacteria 294 2.49e-75   NTclustered gi|470486385|ref|NR_076754.1| 332249 g334752 i0 94.271 157.203125 192 11 100 0 1 192 977 1168 Truepera radiovictrix strain RQ-24 23S ribosomal RNA gene, complete sequence blastn 30183 294 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix
20285033 20285033 PRJNA643700_P_NODE_259316_length_233_cov_2.005435_g257760_i0 PRJNA643700 259316 233 2.005435 4.67266355 Deinococcus 1298 Bacteria Bacteria 407 3.86e-109   NTclustered gi|1477912600|gb|MH929554.1| 47478 g257760 i0 98.69 102.025751072961 229 3 98 0 1 229 112 340 Deinococcus sp. strain 4E07 16S ribosomal RNA gene, partial sequence blastn 23772 409 0.995110024449878 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.
23571049 23571049 PRJNA643700_P_NODE_57639_length_549_cov_2.596000_g56145_i0 PRJNA643700 57639 549 2.596 14.25204 Deinococcus actinosclerus 1768108 Bacteria Bacteria 904 0   NTclustered gi|972944657|gb|CP013910.1| 1768108 g56145 i0 97.196 230.632058287796 535 13 97 2 16 549 74438 74971 Deinococcus actinosclerus strain BM2 chromosome, complete genome blastn 126617 904 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus actinosclerus
24110629 24110629 PRJNA643700_P_NODE_410719_length_165_cov_0.896552_g409163_i0 PRJNA643700 410719 165 0.896552 1.4793108 root 1 Root_unresolved Root_unresolved 300 4.46e-77   NTclustered gi|1092183759|dbj|AB862156.1| 274 g409163 i0 99.394 119.006060606061 165 1 100 0 1 165 664 500 Thermus thermophilus gene for 16S ribosomal RNA, partial sequence, strain: TR2 blastn 19636 300 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus thermophilus
31250298 31250298 PRJNA643700_P_NODE_248755_length_240_cov_2.178010_g247199_i0 PRJNA643700 248755 240 2.17801 5.227224 Thermotogota bacterium 2053689 Bacteria Bacteria 42.7 0.0323   NR HQG98192.1 2053689 g247199 i0 35.3 0.85 68 44 85 0 224 21 84 151 HQG98192.1 chaperonin GroEL [Thermotogota bacterium] diamond 204 42.7 1 Bacteria   Thermotogati Thermotogota         Thermotogota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;