RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where bioproject = "PRJNA643700", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 8 ✖

tax_kingdom 1

  • Pseudomonadati · 8 ✖

bioproject 1

  • PRJNA643700 · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9546778 9546778 PRJNA643700_P_NODE_338368_length_191_cov_1.098592_g336812_i0 PRJNA643700 338368 191 1.098592 2.09831072 Desulfobacterales bacterium 2044940 Bacteria Bacteria 58.4 3.53e-4   NTclustered gi|2621717821|emb|OY776218.1| 2044940 g336812 i0 97.143 0.183246073298429 35 0 18 1 117 150 1777044 1777078 MAG: Desulfobacterales bacterium isolate b599e3c4-2ca3-45e6-bc7f-bb04c01707dc genome assembly, chromosome: 1 blastn 35 58.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
22295156 22295156 PRJNA643700_P_NODE_179798_length_298_cov_1.574297_g178242_i0 PRJNA643700 179798 298 1.574297 4.69140506 Smithellaceae bacterium 2964540 Bacteria Bacteria 52.8 0.028   NTclustered gi|2626214512|emb|OY820932.1| 2964540 g178242 i0 100 0.0939597315436242 28 0 9 0 21 48 1790373 1790346 MAG: Smithellaceae bacterium isolate 90efb5c7-b315-4df1-98b9-9b59cc098579 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Smithellaceae   Smithellaceae bacterium
29291738 29291738 PRJNA643700_P_NODE_330489_length_194_cov_2.448276_g328933_i0 PRJNA643700 330489 194 2.448276 4.74965544 Desulfobacca sp. 2067990 Bacteria Bacteria 42 0.0364   NR MBA4392478.1 2067990 g328933 i0 43.8 0.742268041237113 48 20 63.4 1 157 35 95 142 MBA4392478.1 hypothetical protein [Desulfobacca sp.] diamond 144 42 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobaccia Desulfobaccales Desulfobaccaceae Desulfobacca Desulfobacca sp.
29544232 29544232 PRJNA643700_P_NODE_325250_length_197_cov_1.405405_g323694_i0 PRJNA643700 325250 197 1.405405 2.76864785 Desulfotalea psychrophila LSv54 177439 Bacteria Bacteria 40.4 0.0469   NR CAG34960.1 177439 g323694 i0 35.5 0.944162436548223 62 35 92.9 2 15 197 14 71 CAG34960.1 unknown protein [Desulfotalea psychrophila LSv54] diamond 186 40.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfocapsaceae Desulfotalea Desulfotalea psychrophila
31345315 31345315 PRJNA643700_P_NODE_409516_length_165_cov_0.896552_g407960_i0 PRJNA643700 409516 165 0.896552 1.4793108 Candidatus Magnetoglobus multicellularis str. Araruama 890399 Bacteria Bacteria 41.6 0.0335   NR ETR72209.1 890399 g407960 i0 48.7 0.709090909090909 39 17 65.5 1 35 142 140 178 ETR72209.1 MAG: WD repeat containing protein [Candidatus Magnetoglobus multicellularis str. Araruama] diamond 117 41.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Candidatus Magnetoglobus Candidatus Magnetoglobus multicellularis
31376999 31376999 PRJNA643700_P_NODE_276216_length_223_cov_1.310345_g274660_i0 PRJNA643700 276216 223 1.310345 2.92206935 Desulfobacteraceae bacterium IS3 1934248 Bacteria Bacteria 42 0.0491   NR OQX25017.1 1934248 g274660 i0 41.9 0.57847533632287 43 25 57.8 0 188 60 205 247 OQX25017.1 MAG: hypothetical protein BWK80_17840 [Desulfobacteraceae bacterium IS3] diamond 129 42 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium IS3
31946038 31946038 PRJNA643700_P_NODE_401377_length_166_cov_1.769231_g399821_i0 PRJNA643700 401377 166 1.769231 2.93692346 Syntrophotalea carbinolica 19 Bacteria Bacteria 41.6 0.033   NR WP_011339876.1 19 g399821 i0 43.9 0.740963855421687 41 23 74.1 0 131 9 216 256 WP_011339876.1 complex I subunit 4 family protein [Syntrophotalea carbinolica] diamond 123 41.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Syntrophotaleaceae Syntrophotalea Syntrophotalea carbinolica
32420910 32420910 PRJNA643700_P_NODE_294039_length_213_cov_1.268293_g292483_i0 PRJNA643700 294039 213 1.268293 2.70146409 Desulfoferula mesophila 3058419 Bacteria Bacteria 40 0.0208   NR WP_338604860.1 3058419 g292483 i0 41.2 0.47887323943662 34 20 47.9 0 51 152 3 36 WP_338604860.1 hypothetical protein [Desulfoferula mesophila] diamond 102 40 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfarculia Desulfarculales Desulfarculaceae Desulfoferula Desulfoferula mesophila

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;