RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA643700", tax_kingdom = "Pararnavirae" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 2 ✖

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 2 ✖

bioproject 1

  • PRJNA643700 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7536517 7536517 PRJNA643700_P_NODE_240366_length_246_cov_1.690355_g238810_i0 PRJNA643700 240366 246 1.690355 4.1582733 Lentivirus 11646 Viruses Viruses 52.8 0.022   NTclustered gi|1440989263|gb|MH352720.1| 11676 g238810 i0 100 11.5447154471545 28 0 11 0 157 184 513 486 HIV-1 isolate 10001174 from USA pol protein (pol) and gag protein (gag) genes, partial cds blastn 2840 52.8 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
23571064 23571064 PRJNA643700_P_NODE_92259_length_435_cov_2.722798_g90707_i0 PRJNA643700 92259 435 2.722798 11.8441713 Lentivirus humimdef1 3418650 Viruses Viruses 56.5 0.003   NTclustered gi|1631894114|gb|MK330795.1| 11676 g90707 i0 100 0.0689655172413793 30 0 7 0 321 350 185 214 HIV-1 isolate NAB026 from India pol protein (pol) gene, partial cds blastn 30 56.5 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;