RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA643700", tax_kingdom = "Orthornavirae" and tax_phylum = "Pisuviricota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Pisuviricota · 2 ✖

tax_kingdom 1

  • Orthornavirae · 2 ✖

bioproject 1

  • PRJNA643700 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15921051 15921051 PRJNA643700_P_NODE_340833_length_190_cov_0.950355_g339277_i0 PRJNA643700 340833 190 0.950355 1.8056745 Betacoronavirus pandemicum 3418604 Viruses Viruses 56.5 0.001   NTclustered gi|2155033579|emb|OV039277.1| 2697049 g339277 i0 100 0.157894736842105 30 0 16 0 161 190 30513 30542 Severe acute respiratory syndrome coronavirus 2 isolate 165 genome assembly, chromosome: 165 blastn 30 56.5 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
27618495 27618495 PRJNA643700_P_NODE_356544_length_182_cov_1.834586_g354988_i0 PRJNA643700 356544 182 1.834586 3.33894652 Nidovirus hypomesus2 3116752 Viruses Viruses 68.2 1.79e-11   NR DBA47674.1 3116752 g354988 i0 50 0.956043956043956 58 29 95.6 0 180 7 404 461 DBA47674.1 MAG TPA_asm: ORF1ab polyprotein [Nidovirus hypomesus20729] diamond 174 68.2 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales     Nidovirus hypomesus20729

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;