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contig_metadata

15 rows where bioproject = "PRJNA643700", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 15 ✖

tax_kingdom 1

  • Metazoa · 15 ✖

tax_clade 1

bioproject 1

  • PRJNA643700 · 15 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1894303 1894303 PRJNA643700_P_NODE_227442_length_255_cov_4.199029_g225886_i0 PRJNA643700 227442 255 4.199029 10.70752395 Strongyloides ratti 34506 Nematoda Nematoda 52.8 0.023   NTclustered gi|1376134401|ref|XM_024647160.1| 34506 g225886 i0 100 0.109803921568627 28 0 11 0 221 248 141 168 Strongyloides ratti N-alpha-acetyltransferase 35, NatC auxiliary subunit (SRAE_1000033900), partial mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
4445766 4445766 PRJNA643700_P_NODE_205224_length_274_cov_1.155556_g203668_i0 PRJNA643700 205224 274 1.155556 3.16622344 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.025   NTclustered gi|687865582|emb|LK927621.1| 6239 g203668 i0 100 0.204379562043796 28 0 10 0 15 42 136086 136059 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000084 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
15920883 15920883 PRJNA643700_P_NODE_111733_length_393_cov_2.485465_g110179_i0 PRJNA643700 111733 393 2.485465 9.76787745 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.038   NTclustered gi|690020008|emb|LM527523.1| 174720 g110179 i0 100 0.0712468193384224 28 0 7 0 121 148 328 301 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000112 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
15920966 15920966 PRJNA643700_P_NODE_234053_length_251_cov_1.029703_g232497_i0 PRJNA643700 234053 251 1.029703 2.58455453 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.023   NTclustered gi|687022698|emb|LM525612.1| 174720 g232497 i0 92.105 0.151394422310757 38 2 15 1 37 74 40236 40200 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000022 blastn 38 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
17196138 17196138 PRJNA643700_P_NODE_38234_length_660_cov_2.746318_g36885_i0 PRJNA643700 38234 660 2.746318 18.1256988 Caenorhabditis elegans 6239 Nematoda Nematoda 54.7 0.018   NTclustered gi|351061203|emb|FO081081.1| 6239 g36885 i0 100 0.0878787878787879 29 0 4 0 203 231 36070 36042 Caenorhabditis elegans Cosmid F54D7, complete sequence blastn 58 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
24844535 24844535 PRJNA643700_P_NODE_331940_length_194_cov_1.075862_g330384_i0 PRJNA643700 331940 194 1.075862 2.08717228 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.017   NTclustered gi|690018472|emb|LM525710.1| 174720 g330384 i0 100 0.288659793814433 28 0 14 0 93 120 77094 77067 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000106 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
26923117 26923117 PRJNA643700_P_NODE_249102_length_240_cov_1.633508_g247546_i0 PRJNA643700 249102 240 1.633508 3.9204192 Anisakis simplex 6269 Nematoda Nematoda 42.4 0.0091   NR VDK78339.1 6269 g247546 i0 64.1 0.4875 39 13 47.5 1 1 114 44 82 VDK78339.1 unnamed protein product [Anisakis simplex] diamond 117 42.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anisakidae Anisakis Anisakis simplex
27061911 27061911 PRJNA643700_P_NODE_387422_length_169_cov_0.866667_g385866_i0 PRJNA643700 387422 169 0.866667 1.46466723 Onchocercidae 6296 Nematoda Nematoda 45.8 0.00114   NR CDQ02964.2 6279 g385866 i0 48.7 5.53846153846154 39 18 69.2 1 17 133 425 461 CDQ02964.2 Bm7449, isoform b [Brugia malayi] diamond 936 45.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
27207475 27207475 PRJNA643700_P_NODE_424402_length_162_cov_0.920354_g422846_i0 PRJNA643700 424402 162 0.920354 1.49097348 Caenorhabditis briggsae 6238 Nematoda Nematoda 47.4 2.86e-4   NR XP_002635469.2 6238 g422846 i0 85.7 2.57407407407407 21 3 38.9 0 99 161 745 765 XP_002635469.2 Protein CBG08763 [Caenorhabditis briggsae] diamond 417 47.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
27788611 27788611 PRJNA643700_P_NODE_101304_length_414_cov_3.389041_g99751_i0 PRJNA643700 101304 414 3.389041 14.03062974 Trichostrongylidae 6315 Nematoda Nematoda 57.8 1.24e-6   NR CDJ94991.1 6289 g99751 i0 42.9 4.3768115942029 70 34 46.4 2 146 337 409 478 CDJ94991.1 RNA-directed DNA polymerase (reverse transcriptase) domain containing protein [Haemonchus contortus] diamond 1812 57.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Haemonchus Haemonchus contortus
28344526 28344526 PRJNA643700_P_NODE_411306_length_164_cov_2.260870_g409750_i0 PRJNA643700 411306 164 2.26087 3.7078268 Aphelenchoides besseyi 269767 Nematoda Nematoda 53.5 1.98e-6   NR KAI6180585.1 269767 g409750 i0 41.5 0.969512195121951 53 31 97 0 160 2 557 609 KAI6180585.1 Alpha-galactosidase [Aphelenchoides besseyi] diamond 159 53.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides besseyi
30049499 30049499 PRJNA643700_P_NODE_372411_length_175_cov_1.380952_g370855_i0 PRJNA643700 372411 175 1.380952 2.416666 Ancylostoma ceylanicum 53326 Nematoda Nematoda 40.4 0.0477   NR EYC22546.1 53326 g370855 i0 46.2 0.668571428571429 39 19 63.4 1 47 157 60 98 EYC22546.1 hypothetical protein Y032_0017g3413 [Ancylostoma ceylanicum] diamond 117 40.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma ceylanicum
31250296 31250296 PRJNA643700_P_NODE_199095_length_279_cov_2.134783_g197539_i0 PRJNA643700 199095 279 2.134783 5.95604457 Caenorhabditis briggsae 6238 Nematoda Nematoda 43.9 0.0202   NR UMM34810.1 6238 g197539 i0 34.4 1.37634408602151 64 42 68.8 0 210 19 65 128 UMM34810.1 hypothetical protein L5515_007713 [Caenorhabditis briggsae] diamond 384 43.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
32306880 32306880 PRJNA643700_P_NODE_140979_length_345_cov_1.756757_g139424_i0 PRJNA643700 140979 345 1.756757 6.06081165 root 1 Root_unresolved Root_unresolved 218 1.79e-67   NR UMM35145.1 6238 g139424 i0 91.2 492.321739130435 114 10 99.1 0 3 344 206 319 UMM35145.1 hypothetical protein L5515_007902 [Caenorhabditis briggsae] diamond 169851 220 0.990909090909091 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
32370048 32370048 PRJNA643700_P_NODE_284079_length_218_cov_2.124260_g282523_i0 PRJNA643700 284079 218 2.12426 4.6308868 Opisthokonta 33154 Nematoda Nematoda 65.1 3.09e-10   NR EFP04527.1 31234 g282523 i0 55.3 3.6743119266055 47 21 64.7 0 214 74 207 253 EFP04527.1 hypothetical protein CRE_31234 [Caenorhabditis remanei] diamond 801 65.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;