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contig_metadata

10 rows where bioproject = "PRJNA643700" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 10 ✖

bioproject 1

  • PRJNA643700 · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4446034 4446034 PRJNA643700_P_NODE_94984_length_429_cov_1.355263_g93432_i0 PRJNA643700 94984 429 1.355263 5.81407827 Trebouxia sp. SL0000003 3350044 Plants Plants 56.5 0.003   NTclustered gi|2917929619|emb|OZ234907.1| 3350044 g93432 i0 97.059 0.144522144522145 34 0 8 1 338 370 468846 468879 Trebouxia sp. SL0000003 genome assembly, chromosome: 2 blastn 62 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
7536582 7536582 PRJNA643700_P_NODE_354046_length_183_cov_2.328358_g352490_i0 PRJNA643700 354046 183 2.328358 4.26089514 Trebouxiaceae 2507902 Plants Plants 278 2.36e-70   NTclustered gi|255506491|gb|GQ168957.1| 41462 g352490 i0 93.989 108.983606557377 183 11 100 0 1 183 249 67 Myrmecia bisecta strain SAG 2043 23S large subunit ribosomal RNA (rrnL) gene, partial sequence; chloroplast blastn 19944 278 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia [Myrmecia] bisecta
14647095 14647095 PRJNA643700_P_NODE_334412_length_193_cov_0.812500_g332856_i0 PRJNA643700 334412 193 0.8125 1.568125 Rhexinema sarcinoideum 43261 Plants Plants 52.8 0.017   NTclustered gi|1052423652|gb|KX306821.1| 43261 g332856 i0 100 0.145077720207254 28 0 15 0 63 90 114637 114610 Rhexinema sarcinoideum chloroplast, complete genome blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Helicodictyaceae Rhexinema Rhexinema sarcinoideum
18470270 18470270 PRJNA643700_P_NODE_103195_length_410_cov_2.861496_g101641_i0 PRJNA643700 103195 410 2.861496 11.7321336 Trebouxia sp. SL0000003 3350044 Plants Plants 54.7 0.011   NTclustered gi|2917929620|emb|OZ234908.1| 3350044 g101641 i0 94.444 0.180487804878049 36 1 9 1 179 213 3415715 3415750 Trebouxia sp. SL0000003 genome assembly, chromosome: 3 blastn 74 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
22295136 22295136 PRJNA643700_P_NODE_147118_length_336_cov_3.411150_g145563_i0 PRJNA643700 147118 336 3.41115 11.461464 Haematococcus lacustris 44745 Plants Plants 56.5 0.002   NTclustered gi|1337018090|gb|MG677935.1| 44745 g145563 i0 94.595 0.220238095238095 37 1 11 1 295 331 805185 805220 Haematococcus lacustris strain UTEX 2505 chloroplast, complete genome blastn 74 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
23570839 23570839 PRJNA643700_P_NODE_253859_length_237_cov_1.228723_g252303_i0 PRJNA643700 253859 237 1.228723 2.91207351 Hyalomonas oviformis 40531 Plants Plants 52.8 0.021   NTclustered gi|2386956266|ref|NC_068624.1| 40531 g252303 i0 96.774 0.130801687763713 31 1 13 0 90 120 49594 49564 Hyalomonas oviformis strain SAG62-27 chloroplast, complete genome blastn 31 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Hyalomonas Hyalomonas oviformis
23570952 23570952 PRJNA643700_P_NODE_388619_length_169_cov_0.866667_g387063_i0 PRJNA643700 388619 169 0.866667 1.46466723 Trebouxia aggregata 160068 Plants Plants 52.8 0.014   NTclustered gi|162134382|gb|EU123993.1| 160068 g387063 i0 100 0.165680473372781 28 0 17 0 30 57 2505 2532 Trebouxia aggregata strain SAG 219-1d small-subunit ribosomal RNA (rrs), 5S ribosomal RNA (rrf), and tRNA-Gly (trnG(gcc)) genes, complete sequence; chloroplast blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia aggregata
28881212 28881212 PRJNA643700_P_NODE_146368_length_337_cov_3.604167_g144813_i0 PRJNA643700 146368 337 3.604167 12.14604279 Chlamydomonas reinhardtii 3055 Plants Plants 44.3 0.0278   NR XP_042921633.1 3055 g144813 i0 48.7 0.347181008902077 39 20 34.7 0 149 33 4 42 XP_042921633.1 uncharacterized protein CHLRE_09g413700v5 [Chlamydomonas reinhardtii] diamond 117 44.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
29291735 29291735 PRJNA643700_P_NODE_252689_length_238_cov_0.825397_g251133_i0 PRJNA643700 252689 238 0.825397 1.96444486 Volvox africanus 51714 Plants Plants 42.4 0.0496   NR GIL47893.1 51714 g251133 i0 42.9 1.41176470588235 56 31 70.6 1 178 11 162 216 GIL47893.1 hypothetical protein Vafri_4524 [Volvox africanus] diamond 336 42.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox africanus
32041207 32041207 PRJNA643700_P_NODE_241658_length_245_cov_1.969388_g240102_i0 PRJNA643700 241658 245 1.969388 4.8250006 Flabellia petiolata 189428 Plants Plants 43.9 0.0146   NR AYC63916.1 189428 g240102 i0 36.4 0.538775510204082 44 28 53.9 0 201 70 162 205 AYC63916.1 hypothetical protein [Flabellia petiolata] diamond 132 43.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Halimedaceae Flabellia Flabellia petiolata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;