RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA643700", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA643700 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27902324 27902324 PRJNA643700_P_NODE_412345_length_164_cov_1.356522_g410789_i0 PRJNA643700 412345 164 1.356522 2.22469608 Verrucomicrobia bacterium Tous-C9LFEB 1982333 Bacteria Bacteria 41.6 0.0334   NR PAW77838.1 1982333 g410789 i0 39 0.75 41 25 75 0 142 20 467 507 PAW77838.1 MAG: hypothetical protein B9S32_09555 [Verrucomicrobia bacterium Tous-C9LFEB] diamond 123 41.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobia bacterium Tous-C9LFEB
28313071 28313071 PRJNA643700_P_NODE_236886_length_248_cov_15.321608_g235330_i0 PRJNA643700 236886 248 15.321608 37.99758784 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 43.5 0.0216   NR MEK0445437.1 2026799 g235330 i0 38 0.604838709677419 50 31 60.5 0 76 225 398 447 MEK0445437.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 150 43.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30934450 30934450 PRJNA643700_P_NODE_359214_length_181_cov_1.545455_g357658_i0 PRJNA643700 359214 181 1.545455 2.79727355 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 42 0.0304   NR MFM1748863.1 2026799 g357658 i0 38.8 0.812154696132597 49 25 81.2 1 150 4 16 59 MFM1748863.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 147 42 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;