RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA643700", tax_clade = "Metamonada" and tax_phylum = "Fornicata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Fornicata · 2 ✖

tax_clade 1

  • Metamonada · 2 ✖

bioproject 1

  • PRJNA643700 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22295286 22295286 PRJNA643700_P_NODE_346598_length_187_cov_1.130435_g345042_i0 PRJNA643700 346598 187 1.130435 2.11391345 Spironucleus barkhanus 103874 Fornicata other_Eukaryota 58.4 3.44e-4   NTclustered gi|112359335|gb|DQ812518.1| 103874 g345042 i0 97.059 0.181818181818182 34 1 18 0 76 109 1151 1118 Spironucleus barkhanus isolate Sp1 ATP-binding cassette subfamily C (CFTR/MRP) member 1, ATP-binding cassette subfamily C (CFTR/MRP) member 5, hypothetical proteins, and calmodulin genes, complete cds; and hypothetical protein gene, partial cds blastn 34 58.4 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Spironucleus Spironucleus barkhanus
24844451 24844451 PRJNA643700_P_NODE_25360_length_780_cov_44.547196_g24232_i0 PRJNA643700 25360 780 44.547196 347.4681288 Spironucleus salmonicida 348837 Fornicata other_Eukaryota 54.7 0.022   NTclustered gi|2794884813|ref|XM_067907130.1| 348837 g24232 i0 94.444 0.0461538461538462 36 1 5 1 559 594 2090 2124 Spironucleus salmonicida uncharacterized protein (SS50377_23265), partial mRNA blastn 36 54.7 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Spironucleus Spironucleus salmonicida

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;