RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA643700", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA643700 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29102463 29102463 PRJNA643700_P_NODE_314208_length_202_cov_2.124183_g312652_i0 PRJNA643700 314208 202 2.124183 4.29084966 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 41.6 0.0116   NR MFN8570828.1 2026741 g312652 i0 40.5 0.623762376237624 42 20 62.4 1 184 59 21 57 MFN8570828.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 126 41.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31029386 31029386 PRJNA643700_P_NODE_366755_length_178_cov_0.860465_g365199_i0 PRJNA643700 366755 178 0.860465 1.5316277 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 42 0.0296   NR UCE18861.1 2026742 g365199 i0 38.8 0.825842696629214 49 24 82.6 1 29 175 162 204 UCE18861.1 MAG: rod shape-determining protein RodA [Gemmatimonadota bacterium] diamond 147 42 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;