RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA643700", tax_clade = "FCB group" and tax_phylum = "Candidatus Hydrogenedentota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Hydrogenedentota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA643700 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27808017 27808017 PRJNA643700_P_NODE_392544_length_168_cov_0.873950_g390988_i0 PRJNA643700 392544 168 0.87395 1.468236 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 42 0.025   NR MEW5693354.1 2030809 g390988 i0 42.2 0.803571428571429 45 26 80.4 0 158 24 34 78 MEW5693354.1 glycosyltransferase family 4 protein [Candidatus Hydrogenedentota bacterium] diamond 135 42 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
32199417 32199417 PRJNA643700_P_NODE_287758_length_216_cov_1.952096_g286202_i0 PRJNA643700 287758 216 1.952096 4.21652736 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 39.7 0.0358   NR MDQ1257969.1 2030809 g286202 i0 37.8 0.513888888888889 37 23 51.4 0 124 14 7 43 MDQ1257969.1 hypothetical protein [Candidatus Hydrogenedentota bacterium] diamond 111 39.7 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;