RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA643700", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 2 ✖

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA643700 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13372233 13372233 PRJNA643700_P_NODE_338151_length_191_cov_1.098592_g336595_i0 PRJNA643700 338151 191 1.098592 2.09831072 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 52.8 0.016   NTclustered gi|290969962|ref|XM_002667952.1| 5762 g336595 i0 100 0.293193717277487 28 0 15 0 29 56 187 160 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_55013), partial mRNA blastn 56 52.8 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
30315223 30315223 PRJNA643700_P_NODE_112412_length_392_cov_1.772595_g110858_i0 PRJNA643700 112412 392 1.772595 6.9485724 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 72.8 3.27e-13   NR XP_002672598.1 5762 g110858 i0 56.3 5.96938775510204 64 28 49 0 15 206 19 82 XP_002672598.1 polyubiquitin [Naegleria gruberi] diamond 2340 72.8 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;