RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

13 rows where bioproject = "PRJNA642647" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Archaea · 13 ✖

bioproject 1

  • PRJNA642647 · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13912553 13912553 PRJNA642647_P_NODE_5571_length_161_cov_1.846774_g5521_i0 PRJNA642647 5571 161 1.846774 2.97330614 Archaea 2157 Archaea Archaea 71.3 3.69e-8   NTclustered gi|765560211|gb|KP308712.1| 115547 g5521 i0 87.097 1.47204968944099 62 8 39 0 81 142 185452 185513 Uncultured archaeon clone gwa2_scaffold_75 genomic sequence blastn 237 71.3 1 Archaea               uncultured archaeon
15920874 15920874 PRJNA642647_P_NODE_673_length_435_cov_95.505025_g624_i0 PRJNA642647 673 435 95.505025 415.44685875 uncultured Methanoregula sp. 1005933 Archaea Archaea 606 7.149999999999998e-169   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g624 i0 93.494 226.489655172414 415 15 94 8 29 435 3117706 3117296 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 98523 606 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
26732710 26732710 PRJNA642647_P_NODE_6461_length_151_cov_3.307018_g6411_i0 PRJNA642647 6461 151 3.307018 4.99359718 Nitrososphaerales archaeon 2268197 Archaea Archaea 50.1 2.76e-5   NR MFI5404988.1 2268197 g6411 i0 66.7 1.60927152317881 30 10 59.6 0 62 151 349 378 MFI5404988.1 IMP dehydrogenase [Nitrososphaerales archaeon] diamond 243 50.1 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales     Nitrososphaerales archaeon
26764716 26764716 PRJNA642647_P_NODE_3941_length_181_cov_1.527778_g3891_i0 PRJNA642647 3941 181 1.527778 2.76527818 Nanobdellota archaeon 2026764 Archaea Archaea 55.5 4.09e-7   NR MEK6881618.1 2026764 g3891 i0 51.9 0.895027624309392 54 23 86.2 2 175 20 115 167 MEK6881618.1 hypothetical protein [Nanoarchaeota archaeon] diamond 162 55.5 1 Archaea   Nanobdellati Nanobdellota         Nanobdellota archaeon
26764720 26764720 PRJNA642647_P_NODE_6701_length_150_cov_1.707965_g6651_i0 PRJNA642647 6701 150 1.707965 2.5619475 Methanomassiliicoccaceae archaeon 2052168 Archaea Archaea 65.9 6.23e-11   NR HOL08031.1 2052168 g6651 i0 61.2 0.98 49 19 98 0 147 1 213 261 HOL08031.1 hypothetical protein [Methanomassiliicoccaceae archaeon] diamond 147 65.9 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomassiliicoccaceae   Methanomassiliicoccaceae archaeon
26923113 26923113 PRJNA642647_P_NODE_5122_length_166_cov_2.782946_g5072_i0 PRJNA642647 5122 166 2.782946 4.61969036 Candidatus Pacearchaeota archaeon 2026773 Archaea Archaea 44.7 0.00267   NR MCK9570108.1 2026773 g5072 i0 78.3 0.41566265060241 23 5 41.6 0 164 96 333 355 MCK9570108.1 phage major capsid protein [Candidatus Pacearchaeota archaeon] diamond 69 44.7 1 Archaea Candidatus Pacearchaeota Nanobdellati           Candidatus Pacearchaeota archaeon
26954516 26954516 PRJNA642647_P_NODE_2562_length_216_cov_2.217877_g2512_i0 PRJNA642647 2562 216 2.217877 4.79061432 Candidatus Pacearchaeota archaeon 2026773 Archaea Archaea 61.6 5.69e-9   NR MCK5617511.1 2026773 g2512 i0 71.8 0.541666666666667 39 11 54.2 0 93 209 616 654 MCK5617511.1 hypothetical protein [Candidatus Pacearchaeota archaeon] diamond 117 61.6 1 Archaea Candidatus Pacearchaeota Nanobdellati           Candidatus Pacearchaeota archaeon
27366032 27366032 PRJNA642647_P_NODE_2123_length_237_cov_1.735000_g2073_i0 PRJNA642647 2123 237 1.735 4.11195 Thermoproteota archaeon 2056631 Archaea Archaea 93.2 4.81e-20   NR RDJ35382.1 2056631 g2073 i0 58.9 1.84810126582278 73 30 92.4 0 221 3 126 198 RDJ35382.1 MAG: hypothetical protein DWQ19_11240 [Thermoproteota archaeon] diamond 438 93.2 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
28502460 28502460 PRJNA642647_P_NODE_3847_length_183_cov_1.027397_g3797_i0 PRJNA642647 3847 183 1.027397 1.88013651 Candidatus Bathyarchaeota archaeon 2026714 Archaea Archaea 58.5 4.54e-8   NR MCW4039965.1 2026714 g3797 i0 51.7 0.983606557377049 60 26 98.4 1 183 4 479 535 MCW4039965.1 PHP domain-containing protein [Candidatus Bathyarchaeota archaeon] diamond 180 58.5 1 Archaea   Thermoproteati Candidatus Bathyarchaeota         Candidatus Bathyarchaeota archaeon
30460832 30460832 PRJNA642647_P_NODE_4813_length_167_cov_1.769231_g4763_i0 PRJNA642647 4813 167 1.769231 2.95461577 Methanosarcina sp. 2213 Archaea Archaea 58.5 2.14e-8   NR HET8685962.1 2213 g4763 i0 43.6 0.988023952095808 55 29 95.2 1 161 3 125 179 HET8685962.1 hypothetical protein [Methanosarcina sp.] diamond 165 58.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
30567163 30567163 PRJNA642647_P_NODE_3993_length_180_cov_2.447552_g3943_i0 PRJNA642647 3993 180 2.447552 4.4055936000000004 root 1 Root_unresolved Root_unresolved 57.8 7.8e-8   NR HET8686064.1 2213 g3943 i0 67.6 1.85 37 12 61.7 0 112 2 279 315 HET8686064.1 hypothetical protein [Methanosarcina sp.] diamond 333 58.2 0.993127147766323 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
31535183 31535183 PRJNA642647_P_NODE_5376_length_164_cov_1.503937_g5326_i0 PRJNA642647 5376 164 1.503937 2.46645668 Methanosarcina sp. 2213 Archaea Archaea 80.1 8.55e-16   NR HET8689126.1 2213 g5326 i0 64.8 0.98780487804878 54 19 98.8 0 2 163 264 317 HET8689126.1 hypothetical protein [Methanosarcina sp.] diamond 162 80.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
32294643 32294643 PRJNA642647_P_NODE_6299_length_152_cov_2.982609_g6249_i0 PRJNA642647 6299 152 2.982609 4.53356568 Methanosarcina sp. 2213 Archaea Archaea 58.5 4.42e-9   NR HET8686574.1 2213 g6249 i0 53.1 0.967105263157895 49 23 96.7 0 5 151 83 131 HET8686574.1 hypothetical protein [Methanosarcina sp.] diamond 147 58.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;