RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA642647" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA642647 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6996542 6996542 PRJNA642647_P_NODE_2746_length_210_cov_0.971098_g2696_i0 PRJNA642647 2746 210 0.971098 2.0393058 Stenostomum leucops 52061 Platyhelminthes Platyhelminthes 361 2.6999999999999998e-95   NTclustered gi|28273263|gb|AY157151.1| 52061 g2696 i0 97.619 1 210 5 100 0 1 210 2206 2415 Stenostomum leucops 28S large subunit ribosomal RNA gene, partial sequence blastn 210 361 1 Eukaryota Opisthokonta Metazoa Platyhelminthes     Stenostomidae Stenostomum Stenostomum leucops
8271254 8271254 PRJNA642647_P_NODE_2207_length_231_cov_3.293814_g2157_i0 PRJNA642647 2207 231 3.293814 7.60871034 Pentacoelum hispaniense 1070818 Platyhelminthes Platyhelminthes 161 3.29e-35   NTclustered gi|341958309|gb|JN009787.1| 1070818 g2157 i0 80.263 87.6709956709957 228 33 98 12 3 229 1119 1335 Pentacoelum hispaniense 28S ribosomal RNA gene, partial sequence blastn 20252 161 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Bdellouridae Pentacoelum Pentacoelum hispaniense
8271264 8271264 PRJNA642647_P_NODE_3007_length_202_cov_1.787879_g2957_i0 PRJNA642647 3007 202 1.787879 3.61151558 Stenostomum leucops 52061 Platyhelminthes Platyhelminthes 368 1.54e-97   NTclustered gi|28273263|gb|AY157151.1| 52061 g2957 i0 99.505 78.2178217821782 202 1 100 0 1 202 2743 2944 Stenostomum leucops 28S large subunit ribosomal RNA gene, partial sequence blastn 15800 368 1 Eukaryota Opisthokonta Metazoa Platyhelminthes     Stenostomidae Stenostomum Stenostomum leucops
8271276 8271276 PRJNA642647_P_NODE_3787_length_184_cov_1.258503_g3737_i0 PRJNA642647 3787 184 1.258503 2.31564552 Stenostomum sp. (in: flatworms) 39377 Platyhelminthes Platyhelminthes 337 3.869999999999999e-88   NTclustered gi|2866376398|gb|PQ722310.1| 39377 g3737 i0 100 62 182 0 99 0 3 184 302 483 Stenostomum sp. (in: flatworms) isolate F5 large subunit ribosomal RNA gene, partial sequence blastn 11408 337 1 Eukaryota Opisthokonta Metazoa Platyhelminthes     Stenostomidae Stenostomum Stenostomum sp. (in: flatworms)
19744870 19744870 PRJNA642647_P_NODE_5636_length_160_cov_2.203252_g5586_i0 PRJNA642647 5636 160 2.203252 3.5252032 Neokytorhynchus pacificus 3077875 Platyhelminthes Platyhelminthes 56.5 0.001   NTclustered gi|2583940418|gb|OR616254.1| 3077875 g5586 i0 100 0.1875 30 0 19 0 81 110 1246 1217 Neokytorhynchus pacificus voucher DNA33LAN large subunit ribosomal RNA gene, partial sequence blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Rhabdocoela Kytorhynchidae Neokytorhynchus Neokytorhynchus pacificus
20284974 20284974 PRJNA642647_P_NODE_6116_length_154_cov_2.384615_g6066_i0 PRJNA642647 6116 154 2.384615 3.6723071 Trematoda 6178 Platyhelminthes Platyhelminthes 87.9 3.46e-13   NTclustered gi|1964739497|gb|MW361240.1| 66766 g6066 i0 78.261 12.6103896103896 138 28 89 2 17 153 5651 5787 Cryptocotyle lingua 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 1942 87.9 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Opisthorchiida Heterophyidae Cryptocotyle Cryptocotyle lingua

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;