RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where bioproject = "PRJNA642647", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 8 ✖

tax_kingdom 1

  • Pseudomonadati · 8 ✖

bioproject 1

  • PRJNA642647 · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12637740 12637740 PRJNA642647_P_NODE_5290_length_165_cov_2.414062_g5240_i0 PRJNA642647 5290 165 2.414062 3.9832023 Bdellovibrio 958 Bacteria Bacteria 294 2.08e-75   NTclustered gi|2800924434|gb|CP168967.1| 959 g5240 i0 98.788 101.763636363636 165 2 100 0 1 165 784964 784800 Bdellovibrio bacteriovorus strain Bd4 chromosome, complete genome blastn 16791 294 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
14646923 14646923 PRJNA642647_P_NODE_4732_length_168_cov_1.412214_g4682_i0 PRJNA642647 4732 168 1.412214 2.37251952 Pigmentibacter sp. JX0631 2976982 Bacteria Bacteria 211 2.2e-50   NTclustered gi|2496589869|gb|CP123622.1| 2976982 g4682 i0 91.558 44.9583333333333 154 12 91 1 12 164 368079 368232 Pigmentibacter sp. JX0631 chromosome, complete genome blastn 7553 211 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae Pigmentibacter Pigmentibacter sp. JX0631
19010061 19010061 PRJNA642647_P_NODE_455_length_518_cov_3.615385_g406_i0 PRJNA642647 455 518 3.615385 18.7276943 Bdellovibrio 958 Bacteria Bacteria 510 6.97e-140   NTclustered gi|2800948966|gb|CP168973.1| 959 g406 i0 85.371 242.032818532819 499 66 96 6 1 495 1677301 1677796 Bdellovibrio bacteriovorus strain HK2 chromosome, complete genome blastn 125373 514 0.992217898832685 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
22295089 22295089 PRJNA642647_P_NODE_4778_length_167_cov_3.092308_g4728_i0 PRJNA642647 4778 167 3.092308 5.16415436 Pseudobdellovibrio sp. HCB154 3386277 Bacteria Bacteria 248 1.66e-61   NTclustered gi|2872995934|gb|CP176530.1| 3386277 g4728 i0 93.902 33.8802395209581 164 10 98 0 4 167 700163 700326 Pseudobdellovibrio sp. HCB154 chromosome, complete genome blastn 5658 248 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio sp. HCB154
25384948 25384948 PRJNA642647_P_NODE_5760_length_159_cov_1.213115_g5710_i0 PRJNA642647 5760 159 1.213115 1.92885285 Pseudobdellovibrionaceae 213483 Bacteria Bacteria 239 9.42e-59   NTclustered gi|2800948966|gb|CP168973.1| 959 g5710 i0 93.711 167.534591194969 159 10 100 0 1 159 1677010 1677168 Bdellovibrio bacteriovorus strain HK2 chromosome, complete genome blastn 26638 239 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
27270879 27270879 PRJNA642647_P_NODE_5123_length_166_cov_2.782946_g5073_i0 PRJNA642647 5123 166 2.782946 4.61969036 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 41.2 0.045   NR MBK7892839.1 2053517 g5073 i0 70.8 0.433734939759036 24 7 43.4 0 93 164 181 204 MBK7892839.1 hypothetical protein [Bdellovibrionales bacterium] diamond 72 41.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29998916 29998916 PRJNA642647_P_NODE_5151_length_166_cov_2.736434_g5101_i0 PRJNA642647 5151 166 2.736434 4.54248044 Bdellovibrio 958 Bacteria Bacteria 45.4 0.00143   NR WP_015090556.1 959 g5101 i0 86.4 2.13253012048193 22 3 39.8 0 68 3 311 332 WP_015090556.1 ABC-F family ATP-binding cassette domain-containing protein [Bdellovibrio bacteriovorus] diamond 354 45.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
32704781 32704781 PRJNA642647_P_NODE_5380_length_164_cov_1.204724_g5330_i0 PRJNA642647 5380 164 1.204724 1.97574736 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 73.6 1.7e-13   NR MBX2989447.1 2026715 g5330 i0 61.1 0.98780487804878 54 21 98.8 0 2 163 269 322 MBX2989447.1 hypothetical protein [Pseudobdellovibrionaceae bacterium] diamond 162 73.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;