RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA642647", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 4 ✖

tax_kingdom 1

  • Metazoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA642647 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10087078 10087078 PRJNA642647_P_NODE_5488_length_162_cov_2.136000_g5438_i0 PRJNA642647 5488 162 2.136 3.46032 Rhabditidae 6243 Nematoda Nematoda 161 2.15e-35   NTclustered gi|48869078|gb|AY602175.1| 135651 g5438 i0 92.105 4.96296296296296 114 9 70 0 46 159 2525 2412 Caenorhabditis sp. CB5161 28S large subunit ribosomal RNA gene, partial sequence blastn 804 161 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis brenneri
17736470 17736470 PRJNA642647_P_NODE_3834_length_183_cov_1.431507_g3784_i0 PRJNA642647 3834 183 1.431507 2.61965781 Pristionchus 54125 Nematoda Nematoda 200 5.259999999999999e-47   NTclustered gi|675118801|gb|KJ877272.1| 358041 g3784 i0 93.333 76.8743169398907 135 9 74 0 46 180 2123 2257 Pristionchus uniformis strain RS0141 28S ribosomal RNA gene, partial sequence blastn 14068 200 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus uniformis
23570712 23570712 PRJNA642647_P_NODE_3639_length_186_cov_3.046980_g3589_i0 PRJNA642647 3639 186 3.04698 5.6673828 Ascaris lumbricoides 6252 Nematoda Nematoda 80.5 7.29e-11   NTclustered gi|32527518|gb|AY210806.1| 6252 g3589 i0 84.337 4.54301075268817 83 11 45 2 102 184 3865 3945 Ascaris lumbricoides 5.8S ribosomal RNA and 28S ribosomal RNA genes, partial sequence blastn 845 80.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ascarididae Ascaris Ascaris lumbricoides
27776394 27776394 PRJNA642647_P_NODE_1424_length_292_cov_2.890196_g1374_i0 PRJNA642647 1424 292 2.890196 8.43937232 Brugia pahangi 6280 Nematoda Nematoda 46.6 0.0028   NR VDN81525.1 6280 g1374 i0 48.3 2.20890410958904 60 25 60.6 2 285 109 278 332 VDN81525.1 unnamed protein product [Brugia pahangi] diamond 645 46.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia pahangi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;