RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA642647", tax_kingdom = "Fungi" and tax_phylum = "Blastocladiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 2 ✖

tax_kingdom 1

  • Fungi · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA642647 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11361956 11361956 PRJNA642647_P_NODE_1869_length_254_cov_1.184332_g1819_i0 PRJNA642647 1869 254 1.184332 3.00820328 Catenaria 109875 Fungi Fungi 171 6.1e-38   NTclustered gi|1866582512|gb|MT730687.1| 109876 g1819 i0 93.162 45.1496062992126 117 6 79 2 1 117 4104 4218 Catenaria anguillulae isolate JEL0194 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 11468 172 0.994186046511628 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Catenariaceae Catenaria Catenaria anguillulae
15920831 15920831 PRJNA642647_P_NODE_2013_length_243_cov_4.393204_g1963_i0 PRJNA642647 2013 243 4.393204 10.67548572 Coelomycidium sp. 2 TP-2011 945700 Fungi Fungi 346 8.97e-91   NTclustered gi|321173734|gb|HQ888715.1| 945700 g1963 i0 92.593 97.1728395061728 243 14 98 1 2 240 1050 808 Coelomycidium sp. 2 TP-2011 18S ribosomal RNA gene, partial sequence blastn 23613 346 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes     Coelomycidium Coelomycidium sp. 2 TP-2011

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;