RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA642647", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA642647 · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18470232 18470232 PRJNA642647_P_NODE_3275_length_195_cov_0.949367_g3225_i0 PRJNA642647 3275 195 0.949367 1.85126565 uncultured delta proteobacterium 34034 Bacteria Bacteria 62.1 2.8e-5   NTclustered gi|2874254016|emb|OY970341.1| 34034 g3225 i0 85.965 2.88205128205128 57 8 29 0 8 64 593984 594040 MAG: uncultured delta proteobacterium isolate MFD01231.bin.c.2 genome assembly, chromosome: 1 blastn 562 62.1 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
32180166 32180166 PRJNA642647_P_NODE_6218_length_153_cov_1.655172_g6168_i0 PRJNA642647 6218 153 1.655172 2.53241316 Bacteria 2 Bacteria Bacteria 41.2 0.0401   NR OGP56020.1 1797834 g6168 i0 46.8 1.90196078431373 47 22 92.2 1 144 4 297 340 OGP56020.1 MAG: hypothetical protein A2V67_13835 [Deltaproteobacteria bacterium RBG_13_61_14] diamond 291 41.6 0.990384615384615 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_13_61_14

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;