RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA642647", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA642647 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6996558 6996558 PRJNA642647_P_NODE_4306_length_174_cov_3.708029_g4256_i0 PRJNA642647 4306 174 3.708029 6.45197046 Plasmodium vaughani 1190499 SAR_Eukaryotes SAR_Eukaryotes 75 3.12e-9   NTclustered gi|1594610379|gb|MK650584.1| 1190499 g4256 i0 87.692 2.21264367816092 65 6 37 2 103 166 384 447 Plasmodium vaughani clone AH0551P_clone_4 small subunit ribosomal RNA gene, partial sequence blastn 385 75 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium vaughani
14646890 14646890 PRJNA642647_P_NODE_1752_length_261_cov_5.330357_g1702_i0 PRJNA642647 1752 261 5.330357 13.91223177 Babesia caballi 5871 SAR_Eukaryotes SAR_Eukaryotes 84.2 8.44e-12   NTclustered gi|2794948076|ref|XR_010957801.1| 5871 g1702 i0 92.982 39.1609195402299 57 4 22 0 195 251 3455 3399 Babesia caballi 28S ribosomal RNA (BcabD6B2_91120), rRNA blastn 10221 84.2 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia caballi
24844317 24844317 PRJNA642647_P_NODE_3560_length_188_cov_1.841060_g3510_i0 PRJNA642647 3560 188 1.84106 3.4611928 Toxoplasma gondii 5811 SAR_Eukaryotes SAR_Eukaryotes 71.3 4.45e-8   NTclustered gi|1085192986|ref|XR_001974150.1| 508771 g3510 i0 100 1.3936170212766 38 0 20 0 151 188 1433 1396 Toxoplasma gondii ME49 28S ribosomal RNA rRNA blastn 262 71.3 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;