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contig_metadata

8 rows where bioproject = "PRJNA642647", tax_clade = "Opisthokonta" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 8 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 8 ✖

bioproject 1

  • PRJNA642647 · 8 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1158544 1158544 PRJNA642647_P_NODE_1381_length_297_cov_5.615385_g1331_i0 PRJNA642647 1381 297 5.615385 16.67769345 Metazoa 33208 Mollusca Mollusca 409 1.42e-109   NTclustered gi|34369194|gb|AY145400.1| 6565 g1331 i0 91.892 98.1481481481482 296 18 99 5 3 297 1850 2140 Crassostrea virginica 28S ribosomal RNA gene, partial sequence blastn 29150 409 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Crassostrea Crassostrea virginica
9546552 9546552 PRJNA642647_P_NODE_1488_length_285_cov_6.661290_g1438_i0 PRJNA642647 1488 285 6.66129 18.9846765 Magallana angulata 2784310 Mollusca Mollusca 372 1.78e-98   NTclustered gi|2416874841|ref|XR_008241671.1| 2784310 g1438 i0 91.822 69.8491228070176 269 19 94 2 3 271 3517 3782 PREDICTED: Crassostrea angulata large subunit ribosomal RNA (LOC128170120), rRNA blastn 19907 372 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Magallana Magallana angulata
19010052 19010052 PRJNA642647_P_NODE_3515_length_189_cov_1.697368_g3465_i0 PRJNA642647 3515 189 1.697368 3.20802552 Octopoda 6638 Mollusca Mollusca 58.4 3.49e-4   NTclustered gi|2239696596|gb|ON524397.1| 61709 g3465 i0 81.081 5.54497354497355 74 13 39 1 94 167 5237 5165 Bolitaena pygmaea isolate A200083 internal transcribed spacer 2, and large subunit ribosomal RNA gene, region blastn 1048 58.4 1 Eukaryota Opisthokonta Metazoa Mollusca Cephalopoda Octopoda Bolitaenidae Bolitaena Bolitaena pygmaea
19744844 19744844 PRJNA642647_P_NODE_2976_length_203_cov_1.692771_g2926_i0 PRJNA642647 2976 203 1.692771 3.43632513 Crassostrea virginica 6565 Mollusca Mollusca 368 1.55e-97   NTclustered gi|194594396|gb|EU660792.1| 6565 g2926 i0 100 98.0394088669951 199 0 98 0 5 203 162 360 Crassostrea virginica isolate CvirI1 18S ribosomal RNA gene, partial sequence blastn 19902 368 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Crassostrea Crassostrea virginica
22836013 22836013 PRJNA642647_P_NODE_3238_length_195_cov_4.208861_g3188_i0 PRJNA642647 3238 195 4.208861 8.20727895 Metazoa 33208 Mollusca Mollusca 198 2.05e-46   NTclustered gi|34369208|gb|AY145414.1| 211853 g3188 i0 88.166 82.1846153846154 169 17 86 3 1 168 2517 2683 Leptochiton asellus 28S ribosomal RNA gene, partial sequence blastn 16026 200 0.99 Eukaryota Opisthokonta Metazoa Mollusca Polyplacophora Lepidopleurida Lepidopleuridae Leptochiton Leptochiton asellus
22836029 22836029 PRJNA642647_P_NODE_5938_length_156_cov_2.865546_g5888_i0 PRJNA642647 5938 156 2.865546 4.47025176 Crassostrea 6564 Mollusca Mollusca 283 4.1899999999999994e-72   NTclustered gi|662170012|gb|KF370409.1| 6565 g5888 i0 100 96.4038461538462 153 0 98 0 4 156 112 264 Crassostrea virginica isolate Cv02 28S ribosomal RNA gene, partial sequence blastn 15039 283 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Crassostrea Crassostrea virginica
23570745 23570745 PRJNA642647_P_NODE_699_length_427_cov_9.317949_g650_i0 PRJNA642647 699 427 9.317949 39.78764223 Crassostrea virginica 6565 Mollusca Mollusca 453 9.66e-123   NTclustered gi|662170012|gb|KF370409.1| 6565 g650 i0 86.588 87.192037470726 425 40 96 12 14 424 759 338 Crassostrea virginica isolate Cv02 28S ribosomal RNA gene, partial sequence blastn 37231 453 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Crassostrea Crassostrea virginica
24110433 24110433 PRJNA642647_P_NODE_1799_length_258_cov_3.918552_g1749_i0 PRJNA642647 1799 258 3.918552 10.10986416 Metazoa 33208 Mollusca Mollusca 115 2.95e-21   NTclustered gi|2245728077|ref|XR_006860449.2| 6454 g1749 i0 90 35.3100775193798 90 8 35 1 1 90 2181 2093 PREDICTED: Haliotis rufescens large subunit ribosomal RNA (LOC124129793), rRNA blastn 9110 115 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Lepetellida Haliotidae Haliotis Haliotis rufescens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;