RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where bioproject = "PRJNA642647", tax_clade = "Opisthokonta" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 9 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 9 ✖

bioproject 1

  • PRJNA642647 · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3168795 3168795 PRJNA642647_P_NODE_1723_length_264_cov_7.105727_g1673_i0 PRJNA642647 1723 264 7.105727 18.75911928 Spizellomyces punctatus 109760 Fungi Fungi 183 8.2e-42   NTclustered gi|1027029543|ref|XR_001677161.1| 645134 g1673 i0 91.176 38.4280303030303 136 10 51 2 4 137 3938 4073 Spizellomyces punctatus DAOM BR117 28S ribosomal RNA (SPPG_11002), rRNA blastn 10145 183 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
7536470 7536470 PRJNA642647_P_NODE_5346_length_164_cov_2.897638_g5296_i0 PRJNA642647 5346 164 2.897638 4.75212632 Fungi 4751 Fungi Fungi 158 2.82e-34   NTclustered gi|296035086|ref|NG_017172.1| 82268 g5296 i0 86.897 87.0243902439024 145 13 87 6 22 164 739 879 Hyaloraphidium curvatum SAG 235-1 18S rRNA gene, partial sequence; from reference material blastn 14272 159 0.993710691823899 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales   Hyaloraphidium Hyaloraphidium curvatum
9546548 9546548 PRJNA642647_P_NODE_1128_length_332_cov_12.162712_g1078_i0 PRJNA642647 1128 332 12.162712 40.38020384 uncultured Rhizophydiales 687209 Fungi Fungi 575 1.4999999999999995e-159   NTclustered gi|2165380892|gb|OL869001.1| 687209 g1078 i0 98.176 81.5271084337349 329 6 99 0 4 332 578 250 Uncultured Rhizophydiales isolate Cosmarium-MDAExp14 large subunit ribosomal RNA gene, partial sequence blastn 27067 575 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales     uncultured Rhizophydiales
10822235 10822235 PRJNA642647_P_NODE_5549_length_161_cov_2.733871_g5499_i0 PRJNA642647 5549 161 2.733871 4.40153231 Monoblepharella sp. 2107739 Fungi Fungi 128 2.16e-25   NTclustered gi|1866582857|gb|MT731032.1| 2107739 g5499 i0 86.441 54.7888198757764 118 15 73 1 43 159 4317 4200 Monoblepharella sp. isolate WJD231 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 8821 128 1 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales Monoblepharidaceae Monoblepharella Monoblepharella sp.
14646929 14646929 PRJNA642647_P_NODE_5532_length_162_cov_0.912000_g5482_i0 PRJNA642647 5532 162 0.912 1.47744 Spizellomyces punctatus 109760 Fungi Fungi 130 6.05e-26   NTclustered gi|1027029571|ref|XR_001677165.1| 645134 g5482 i0 91.579 2.12962962962963 95 7 58 1 4 97 3179 3273 Spizellomyces punctatus DAOM BR117 28S ribosomal RNA (SPPG_11007), partial rRNA blastn 345 130 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
19744859 19744859 PRJNA642647_P_NODE_4496_length_171_cov_2.619403_g4446_i0 PRJNA642647 4496 171 2.619403 4.47917913 Fimicolochytrium jonesii 1396493 Fungi Fungi 167 4.9e-37   NTclustered gi|2432090693|ref|XM_053070959.1| 1396493 g4446 i0 88.889 91.1286549707602 135 15 79 0 4 138 333 467 Fimicolochytrium jonesii 40S ribosomal protein S15 (EV422DRAFT_538211), mRNA blastn 15583 167 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
22295088 22295088 PRJNA642647_P_NODE_4538_length_170_cov_4.571429_g4488_i0 PRJNA642647 4538 170 4.571429 7.7714293 uncultured Rhizophydiales 687209 Fungi Fungi 292 7.69e-75   NTclustered gi|2165384409|gb|OL869120.1| 687209 g4488 i0 98.788 59.6411764705882 165 0 97 2 3 167 4508 4346 Uncultured Rhizophydiales isolate Cosmarium-MDAExp14 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 10139 292 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales     uncultured Rhizophydiales
24844291 24844291 PRJNA642647_P_NODE_1400_length_295_cov_5.523256_g1350_i0 PRJNA642647 1400 295 5.523256 16.2936052 uncultured Rhizophydiales 687209 Fungi Fungi 545 1.03e-150   NTclustered gi|2165384409|gb|OL869120.1| 687209 g1350 i0 100 99.8610169491525 295 0 100 0 1 295 2384 2678 Uncultured Rhizophydiales isolate Cosmarium-MDAExp14 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 29459 545 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales     uncultured Rhizophydiales
26764717 26764717 PRJNA642647_P_NODE_481_length_500_cov_11.840173_g432_i0 PRJNA642647 481 500 11.840173 59.200865 Thoreauomyces humboldtii 1396496 Fungi Fungi 94.7 3.59e-19   NR KAJ3008852.1 1396496 g432 i0 42.6 0.774 129 73 76.8 1 7 390 137 265 KAJ3008852.1 hypothetical protein HKX48_008314 [Thoreauomyces humboldtii] diamond 387 94.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Thoreauomyces Thoreauomyces humboldtii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;