RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA642647" and tax_clade = "Metamonada"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Metamonada · 5 ✖

bioproject 1

  • PRJNA642647 · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3710344 3710344 PRJNA642647_P_NODE_2223_length_230_cov_2.015544_g2173_i0 PRJNA642647 2223 230 2.015544 4.6357512 Trepomonas 44997 Fornicata other_Eukaryota 416 6.319999999999998e-112   NTclustered gi|2592099211|gb|OR670394.1| 460177 g2173 i0 100 97.6521739130435 225 0 98 0 4 228 678 902 Trepomonas sp. PPS6 isolate ZMB2 small subunit ribosomal RNA gene, partial sequence blastn 22460 416 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Trepomonas Trepomonas sp. PPS6
15920849 15920849 PRJNA642647_P_NODE_3393_length_192_cov_1.470968_g3343_i0 PRJNA642647 3393 192 1.470968 2.82425856 Hexamita inflata 28002 Fornicata other_Eukaryota 204 4.31e-48   NTclustered gi|459348792|gb|KC249997.1| 28002 g3343 i0 86.316 1.41145833333333 190 23 98 3 1 189 850 663 Hexamita inflata 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 271 204 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Hexamita Hexamita inflata
17736458 17736458 PRJNA642647_P_NODE_2534_length_217_cov_1.794444_g2484_i0 PRJNA642647 2534 217 1.794444 3.89394348 Trepomonas 44997 Fornicata other_Eukaryota 351 1.69e-92   NTclustered gi|156066402|gb|EF551174.1| 460177 g2484 i0 96.262 62.1382488479263 214 8 99 0 4 217 68 281 Trepomonas sp. PPS6 small subunit ribosomal RNA gene, partial sequence blastn 13484 351 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Trepomonas Trepomonas sp. PPS6
24844293 24844293 PRJNA642647_P_NODE_1540_length_280_cov_2.687243_g1490_i0 PRJNA642647 1540 280 2.687243 7.5242804 Hexamita inflata 28002 Fornicata other_Eukaryota 279 1.09e-70   NTclustered gi|459348792|gb|KC249997.1| 28002 g1490 i0 88.412 0.832142857142857 233 25 83 2 45 276 1910 1679 Hexamita inflata 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 233 279 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Hexamita Hexamita inflata
27017966 27017966 PRJNA642647_P_NODE_3782_length_184_cov_1.408163_g3732_i0 PRJNA642647 3782 184 1.408163 2.59101992 Hexamita inflata 28002 Fornicata other_Eukaryota 70.9 6.21e-13   NR CAK8748468.1 28002 g3732 i0 70.2 0.766304347826087 47 14 76.6 0 44 184 1 47 CAK8748468.1 HINF_094878 [Hexamita inflata] diamond 141 70.9 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Hexamita Hexamita inflata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;