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contig_metadata

31 rows where bioproject = "PRJNA642647" and tax_clade = "Embryophyta"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 31 ✖

bioproject 1

  • PRJNA642647 · 31 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1158549 1158549 PRJNA642647_P_NODE_1841_length_256_cov_1.698630_g1791_i0 PRJNA642647 1841 256 1.69863 4.3484928 Magnoliopsida 3398 Plants Plants 119 2.26e-22   NTclustered gi|2646013110|ref|XR_009880020.1| 3486 g1791 i0 82.353 15.13671875 136 24 53 0 13 148 1198 1333 PREDICTED: Humulus lupulus 28S ribosomal RNA (LOC133808192), rRNA blastn 3875 119 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Cannabaceae Humulus Humulus lupulus
1158553 1158553 PRJNA642647_P_NODE_2201_length_232_cov_1.538462_g2151_i0 PRJNA642647 2201 232 1.538462 3.56923184 Poaceae 4479 Plants Plants 56.5 0.002   NTclustered gi|2922465810|ref|XM_051371856.2| 4522 g2151 i0 96.97 0.689655172413793 33 1 14 0 41 73 470 438 PREDICTED: Lolium perenne protein H2A.5 (LOC127345379), mRNA blastn 160 56.5 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Lolium Lolium perenne
3710347 3710347 PRJNA642647_P_NODE_2463_length_220_cov_1.825137_g2413_i0 PRJNA642647 2463 220 1.825137 4.0153014 Solanum 4107 Plants Plants 291 3.79e-74   NTclustered gi|971579629|ref|XM_015303522.1| 4113 g2413 i0 90 109.090909090909 240 2 99 1 3 220 855 616 PREDICTED: Solanum tuberosum uncharacterized LOC107058156 (LOC107058156), transcript variant X1, mRNA blastn 24000 291 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum tuberosum
4445672 4445672 PRJNA642647_P_NODE_2804_length_207_cov_4.823529_g2754_i0 PRJNA642647 2804 207 4.823529 9.98470503 Persea americana 3435 Plants Plants 377 2.63e-100   NTclustered gi|2249528608|gb|ON685429.1| 3435 g2754 i0 100 99.280193236715 204 0 99 0 4 207 2173 2376 Persea americana isolate BPTPS118 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 20551 377 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Laurales Lauraceae Persea Persea americana
4986913 4986913 PRJNA642647_P_NODE_4564_length_170_cov_2.511278_g4514_i0 PRJNA642647 4564 170 2.511278 4.2691726 Eukaryota 2759 Plants Plants 91.6 3.01e-14   NTclustered gi|2571391326|ref|XR_009110824.2| 3369 g4514 i0 92.188 32.6058823529412 64 5 38 0 106 169 791 854 PREDICTED: Cryptomeria japonica 28S ribosomal RNA (LOC131062223), rRNA blastn 5543 91.6 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Cupressales Cupressaceae Cryptomeria Cryptomeria japonica
6262238 6262238 PRJNA642647_P_NODE_1465_length_288_cov_2.179283_g1415_i0 PRJNA642647 1465 288 2.179283 6.27633504 Streptophyta 35493 Plants Plants 161 4.24e-35   NTclustered gi|2571321288|ref|XR_009368823.1| 3369 g1415 i0 87.77 36.5416666666667 139 15 48 2 4 141 849 986 PREDICTED: Cryptomeria japonica 28S ribosomal RNA (LOC131870516), rRNA blastn 10524 161 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Cupressales Cupressaceae Cryptomeria Cryptomeria japonica
7536452 7536452 PRJNA642647_P_NODE_1566_length_278_cov_2.224066_g1516_i0 PRJNA642647 1566 278 2.224066 6.18290348 Magnoliopsida 3398 Plants Plants 503 5.88e-138   NTclustered gi|2273789310|gb|MZ391807.1| 3635 g1516 i0 99.636 191.906474820144 275 1 99 0 1 275 112056 111782 Gossypium hirsutum voucher L_oaxbrown4 chloroplast, complete genome blastn 53350 503 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malvales Malvaceae Gossypium Gossypium hirsutum
8271284 8271284 PRJNA642647_P_NODE_4367_length_173_cov_2.919118_g4317_i0 PRJNA642647 4367 173 2.919118 5.05007414 Prunus dulcis 3755 Plants Plants 174 2.97e-39   NTclustered gi|1841613357|ref|XM_034351076.1| 3755 g4317 i0 98 2.97109826589595 100 2 92 0 1 100 237 138 PREDICTED: Prunus dulcis late embryogenesis abundant protein 2-like (LOC117620835), mRNA blastn 514 174 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rosaceae Prunus Prunus dulcis
10087055 10087055 PRJNA642647_P_NODE_1848_length_255_cov_2.733945_g1798_i0 PRJNA642647 1848 255 2.733945 6.97155975 Magnoliopsida 3398 Plants Plants 424 4.26e-114   NTclustered gi|2806629351|gb|PQ214322.1| 3435 g1798 i0 96.032 125.223529411765 252 8 99 1 1 252 558273 558522 Persea americana chromosome 1 mitochondrion, complete sequence blastn 31932 424 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Laurales Lauraceae Persea Persea americana
10087087 10087087 PRJNA642647_P_NODE_908_length_372_cov_2.298507_g858_i0 PRJNA642647 908 372 2.298507 8.55044604 Prunus 3754 Plants Plants 348 4.03e-91   NTclustered gi|2699132190|emb|OZ022205.1| 3755 g858 i0 98.485 108.91935483871 198 2 93 1 89 285 5877693 5877890 Prunus dulcis genome assembly, segment: 0 blastn 40518 348 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rosaceae Prunus Prunus dulcis
11361969 11361969 PRJNA642647_P_NODE_449_length_521_cov_25.454545_g400_i0 PRJNA642647 449 521 25.454545 132.61817945 Cucurbita 3660 Plants Plants 510 7.01e-140   NTclustered gi|1281066824|ref|XR_002716478.1| 3661 g400 i0 98.611 66.9654510556622 288 4 55 0 122 409 919 632 PREDICTED: Cucurbita maxima Eukaryotic 18S ribosomal RNA (LOC111475404), rRNA blastn 34889 510 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Cucurbitales Cucurbitaceae Cucurbita Cucurbita maxima
12637722 12637722 PRJNA642647_P_NODE_2170_length_233_cov_3.959184_g2120_i0 PRJNA642647 2170 233 3.959184 9.22489872 Triticum 4564 Plants Plants 425 1.07e-114   NTclustered gi|2123569754|ref|XR_006489792.1| 4565 g2120 i0 100 2378.30472103004 230 0 99 0 4 233 572 343 PREDICTED: Triticum aestivum uncharacterized LOC123178712 (LOC123178712), misc_RNA blastn 554145 425 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
12637737 12637737 PRJNA642647_P_NODE_4810_length_167_cov_1.923077_g4760_i0 PRJNA642647 4810 167 1.923077 3.21153859 Magnoliopsida 3398 Plants Plants 300 4.53e-77   NTclustered gi|2878722096|gb|PQ839730.1| 3489 g4760 i0 99.394 143.634730538922 165 1 99 0 1 165 392459 392623 Artocarpus heterophyllus isolate YNHBLM mitochondrion, complete genome blastn 23987 300 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Moraceae Artocarpus Artocarpus heterophyllus
13371996 13371996 PRJNA642647_P_NODE_1431_length_291_cov_16.307087_g1381_i0 PRJNA642647 1431 291 16.307087 47.45362317 Whipplea modesta 123682 Plants Plants 414 2.9799999999999998e-111   NTclustered gi|325071852|gb|JF321118.1| 123682 g1381 i0 92.466 100.965635738832 292 18 99 3 1 289 2670 2380 Whipplea modesta 26S ribosomal RNA gene, partial sequence blastn 29381 414 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Cornales Hydrangeaceae Whipplea Whipplea modesta
13912536 13912536 PRJNA642647_P_NODE_1611_length_274_cov_5.388186_g1561_i0 PRJNA642647 1611 274 5.388186 14.76362964 Magnoliopsida 3398 Plants Plants 239 1.7999999999999993e-58   NTclustered gi|2292905072|gb|ON931349.1| 3635 g1561 i0 100 122.905109489051 129 0 93 0 143 271 39157 39285 Gossypium hirsutum chromosome SI3Amt_1 mitochondrion sequence blastn 33676 239 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malvales Malvaceae Gossypium Gossypium hirsutum
13912539 13912539 PRJNA642647_P_NODE_2411_length_222_cov_1.897297_g2361_i0 PRJNA642647 2411 222 1.897297 4.21199934 Lauraceae 3433 Plants Plants 403 4.72e-108   NTclustered gi|1858740925|gb|MT628628.1| 3435 g2361 i0 100 99.4594594594595 218 0 98 0 4 221 4526 4743 Persea americana voucher YL01 sequence blastn 22080 403 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Laurales Lauraceae Persea Persea americana
15187045 15187045 PRJNA642647_P_NODE_5712_length_159_cov_3.368852_g5662_i0 PRJNA642647 5712 159 3.368852 5.35647468 Magnoliopsida 3398 Plants Plants 285 1.1899999999999998e-72   NTclustered gi|2130419157|gb|MW413894.1| 3486 g5662 i0 100 153.433962264151 154 0 97 0 4 157 117312 117159 Humulus lupulus mitochondrion, complete genome blastn 24396 287 0.993031358885017 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Cannabaceae Humulus Humulus lupulus
17195929 17195929 PRJNA642647_P_NODE_2714_length_211_cov_1.304598_g2664_i0 PRJNA642647 2714 211 1.304598 2.75270178 Quercus robur 38942 Plants Plants 135 1.79e-27   NTclustered gi|2293041412|ref|XR_007650327.1| 38942 g2664 i0 79.091 57.5308056872038 220 29 99 12 1 208 2649 2435 PREDICTED: Quercus robur 28S ribosomal RNA (LOC126711350), rRNA blastn 12139 135 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Fagaceae Quercus Quercus robur
18470264 18470264 PRJNA642647_P_NODE_835_length_386_cov_13.237822_g785_i0 PRJNA642647 835 386 13.237822 51.09799292 Bupleurum falcatum 46367 Plants Plants 647 0   NTclustered gi|2571153582|gb|OR493979.1| 46367 g785 i0 97.128 104.150259067358 383 11 99 0 1 383 5799 5417 Bupleurum falcatum voucher 2009100601 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 40202 647 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Apiales Apiaceae Bupleurum Bupleurum falcatum
19010036 19010036 PRJNA642647_P_NODE_1075_length_341_cov_4.927632_g1025_i0 PRJNA642647 1075 341 4.927632 16.80322512 Liriodendron 3413 Plants Plants 466 9.71e-127   NTclustered gi|1842045221|gb|MN990597.1| 3414 g1025 i0 91.74 195.33137829912 339 22 99 5 2 338 109779 109445 Liriodendron chinense chloroplast, complete genome blastn 66608 466 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Magnoliales Magnoliaceae Liriodendron Liriodendron chinense
19010050 19010050 PRJNA642647_P_NODE_3075_length_200_cov_2.159509_g3025_i0 PRJNA642647 3075 200 2.159509 4.319018 Eukaryota 2759 Plants Plants 359 9.14e-95   NTclustered gi|391415363|gb|BT065681.2| 4577 g3025 i0 99.495 99.64 198 0 99 1 4 200 868 671 Zea mays full-length cDNA clone ZM_BFc0017K02 mRNA, complete cds blastn 19928 359 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Zea Zea mays
19010051 19010051 PRJNA642647_P_NODE_3295_length_194_cov_2.777070_g3245_i0 PRJNA642647 3295 194 2.77707 5.3875158 Magnoliopsida 3398 Plants Plants 195 2.6299999999999997e-45   NTclustered gi|2130419157|gb|MW413894.1| 3486 g3245 i0 100 115.814432989691 105 0 93 0 4 108 119723 119619 Humulus lupulus mitochondrion, complete genome blastn 22468 196 0.994897959183674 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Cannabaceae Humulus Humulus lupulus
19744858 19744858 PRJNA642647_P_NODE_4196_length_176_cov_2.482014_g4146_i0 PRJNA642647 4196 176 2.482014 4.36834464 Eragrostis tef 110835 Plants Plants 95.3 2.43e-15   NTclustered gi|2710185553|gb|CP137582.1| 110835 g4146 i0 81.197 3.01704545454545 117 22 73 0 46 162 30372399 30372283 Eragrostis tef cultivar Dabbi chromosome 1A blastn 531 95.3 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Eragrostis Eragrostis tef
20284951 20284951 PRJNA642647_P_NODE_2296_length_226_cov_27.523810_g2246_i0 PRJNA642647 2296 226 27.52381 62.2038106 Rosaceae 3745 Plants Plants 407 3.73e-109   NTclustered gi|1777714|gb|U42800.1|PFU42800 23200 g2246 i0 99.111 102.526548672566 225 2 99 0 1 225 50 274 Photinia fraseri 18S ribosomal RNA gene, partial sequence blastn 23171 407 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rosaceae Photinia Photinia x fraseri
21560522 21560522 PRJNA642647_P_NODE_3277_length_194_cov_6.254777_g3227_i0 PRJNA642647 3277 194 6.254777 12.13426738 Cedrus 3321 Plants Plants 191 3.3999999999999997e-44   NTclustered gi|109138948|gb|DQ629435.1| 3322 g3227 i0 99.057 53.659793814433 106 1 55 0 87 192 677 782 Cedrus deodara 18S ribosomal RNA gene, partial sequence blastn 10410 191 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Cedrus Cedrus deodara
23570713 23570713 PRJNA642647_P_NODE_3659_length_186_cov_1.315436_g3609_i0 PRJNA642647 3659 186 1.315436 2.44671096 Cucurbita maxima 3661 Plants Plants 322 1.1e-83   NTclustered gi|1281066069|ref|XR_002716109.1| 3661 g3609 i0 98.361 98.3870967741936 183 3 98 0 1 183 3336 3154 PREDICTED: Cucurbita maxima Eukaryotic 28S ribosomal RNA (LOC111474643), rRNA blastn 18300 322 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Cucurbitales Cucurbitaceae Cucurbita Cucurbita maxima
23570733 23570733 PRJNA642647_P_NODE_5539_length_161_cov_3.846774_g5489_i0 PRJNA642647 5539 161 3.846774 6.19330614 Selaginella selaginoides 69996 Plants Plants 73.1 1.03e-8   NTclustered gi|2484062556|gb|OQ799646.1| 69996 g5489 i0 93.75 0.521739130434783 48 3 30 0 114 161 4523 4570 Selaginella selaginoides voucher J-C Bertier Tour09165 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 84 73.1 1 Eukaryota Embryophyta Viridiplantae Streptophyta Lycopodiopsida Selaginellales Selaginellaceae Selaginella Selaginella selaginoides
25384945 25384945 PRJNA642647_P_NODE_5260_length_165_cov_11.812500_g5210_i0 PRJNA642647 5260 165 11.8125 19.490625 Magnoliopsida 3398 Plants Plants 300 4.46e-77   NTclustered gi|498915483|emb|HF969275.1| 3755 g5210 i0 100 98.2060606060606 162 0 98 0 1 162 429 268 Prunus dulcis genomic DNA containing 18S rRNA gene, ITS1, 5.8S rRNA gene and ITS2, cultivar Chellaston blastn 16204 300 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rosaceae Prunus Prunus dulcis
25384949 25384949 PRJNA642647_P_NODE_5940_length_156_cov_2.722689_g5890_i0 PRJNA642647 5940 156 2.722689 4.24739484 Poaceae 4479 Plants Plants 52.8 0.013   NTclustered gi|2922430717|ref|XR_011750549.1| 4522 g5890 i0 100 1.43589743589744 28 0 18 0 4 31 1924 1951 PREDICTED: Lolium perenne 28S ribosomal RNA (LOC139834882), rRNA blastn 224 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Lolium Lolium perenne
30441246 30441246 PRJNA642647_P_NODE_6173_length_154_cov_1.025641_g6123_i0 PRJNA642647 6173 154 1.025641 1.57948714 Solanum 4107 Plants Plants 41.2 0.00583   NR TMX03370.1 4083 g6123 i0 55 3.11688311688312 40 18 77.9 0 148 29 11 50 TMX03370.1 hypothetical protein EJD97_016771, partial [Solanum chilense] diamond 480 41.2 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum chilense
30492064 30492064 PRJNA642647_P_NODE_3913_length_181_cov_3.395833_g3863_i0 PRJNA642647 3913 181 3.395833 6.14645773 Panicum virgatum 38727 Plants Plants 52 4.88e-6   NR KAG2640198.1 38727 g3863 i0 80.6 2.83425414364641 31 6 51.4 0 179 87 157 187 KAG2640198.1 hypothetical protein PVAP13_2KG057316 [Panicum virgatum] diamond 513 52 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Panicum Panicum virgatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;