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contig_metadata

6 rows where bioproject = "PRJNA642647" and tax_clade = "CRuMs"

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tax_superkingdom 1

tax_clade 1

  • CRuMs · 6 ✖

bioproject 1

  • PRJNA642647 · 6 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1894211 1894211 PRJNA642647_P_NODE_3722_length_185_cov_1.770270_g3672_i0 PRJNA642647 3722 185 1.77027 3.2749995 Rigifila ramosa 1122280 Root_unresolved Root_unresolved 276 8.61e-70   NTclustered gi|390124887|dbj|AB686267.1| 1122280 g3672 i0 93.989 33.3081081081081 183 9 98 2 4 185 48 229 Rigifila ramosa gene for large subunit ribosomal RNA, partial sequence, strain: YPF923 blastn 6162 276 1 Eukaryota CRuMs       Rigifilida   Rigifila Rigifila ramosa
3168816 3168816 PRJNA642647_P_NODE_3243_length_195_cov_3.721519_g3193_i0 PRJNA642647 3243 195 3.721519 7.25696205 Rigifila ramosa 1122280 Root_unresolved Root_unresolved 348 1.92e-91   NTclustered gi|390124887|dbj|AB686267.1| 1122280 g3193 i0 99.479 42.425641025641 192 0 98 1 4 195 1618 1808 Rigifila ramosa gene for large subunit ribosomal RNA, partial sequence, strain: YPF923 blastn 8273 348 1 Eukaryota CRuMs       Rigifilida   Rigifila Rigifila ramosa
3168839 3168839 PRJNA642647_P_NODE_5563_length_161_cov_2.112903_g5513_i0 PRJNA642647 5563 161 2.112903 3.40177383 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 148 1.6599999999999998e-31   NTclustered gi|300078503|gb|GU001165.1| 238746 g5513 i0 85.517 1.30434782608696 145 18 89 3 3 146 2581 2723 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 210 148 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis
18470222 18470222 PRJNA642647_P_NODE_2055_length_241_cov_2.289216_g2005_i0 PRJNA642647 2055 241 2.289216 5.51701056 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 340 4.13e-89   NTclustered gi|300078503|gb|GU001165.1| 238746 g2005 i0 92.437 61.6265560165975 238 18 99 0 1 238 2859 2622 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 14852 340 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis
22295103 22295103 PRJNA642647_P_NODE_6338_length_152_cov_1.486957_g6288_i0 PRJNA642647 6338 152 1.486957 2.26017464 uncultured Micronuclearia 1595896 Root_unresolved Root_unresolved 276 6.770000000000001e-70   NTclustered gi|1516250890|gb|MK177607.1| 1595896 g6288 i0 99.342 97.0065789473684 152 1 100 0 1 152 155 306 Uncultured Micronuclearia clone DDI50.fa small subunit ribosomal RNA gene, partial sequence blastn 14745 276 1 Eukaryota CRuMs       Rigifilida   Micronuclearia uncultured Micronuclearia
23570717 23570717 PRJNA642647_P_NODE_4219_length_176_cov_1.525180_g4169_i0 PRJNA642647 4219 176 1.52518 2.6843168 Rigifila ramosa 1122280 Root_unresolved Root_unresolved 250 4.91e-62   NTclustered gi|390124887|dbj|AB686267.1| 1122280 g4169 i0 93.529 4.9375 170 8 95 2 8 174 478 309 Rigifila ramosa gene for large subunit ribosomal RNA, partial sequence, strain: YPF923 blastn 869 250 1 Eukaryota CRuMs       Rigifilida   Rigifila Rigifila ramosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;