RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA642647", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Parcubacteria"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Parcubacteria · 2 ✖

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA642647 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27460625 27460625 PRJNA642647_P_NODE_6443_length_151_cov_3.333333_g6393_i0 PRJNA642647 6443 151 3.333333 5.03333283 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 46.6 4.45e-4   NR MEN9561157.1 2762014 g6393 i0 95.8 0.47682119205298 24 1 47.7 0 146 75 291 314 MEN9561157.1 hypothetical protein [Candidatus Parcubacteria bacterium] diamond 72 46.6 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
27744915 27744915 PRJNA642647_P_NODE_6644_length_150_cov_3.362832_g6594_i0 PRJNA642647 6644 150 3.362832 5.044248 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 43.1 0.00755   NR MEN9647588.1 2762014 g6594 i0 47.9 0.96 48 24 94 1 145 5 222 269 MEN9647588.1 trimeric autotransporter adhesin [Candidatus Parcubacteria bacterium] diamond 144 43.1 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;