RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where bioproject = "PRJNA642647", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 11 ✖

tax_clade 1

  • Amoebozoa · 11 ✖

bioproject 1

  • PRJNA642647 · 11 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3710342 3710342 PRJNA642647_P_NODE_2043_length_241_cov_4.872549_g1993_i0 PRJNA642647 2043 241 4.872549 11.74284309 Tubulinea 555369 Tubulinea other_Eukaryota 435 1.84e-117   NTclustered gi|399764177|gb|JQ271688.1| 5778 g1993 i0 100 97.49377593361 235 0 98 0 4 238 139 373 Hartmannella vermiformis strain ECH26 18S ribosomal RNA gene, partial sequence blastn 23496 435 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
4445677 4445677 PRJNA642647_P_NODE_3544_length_188_cov_3.238411_g3494_i0 PRJNA642647 3544 188 3.238411 6.08821268 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 309 8.66e-80   NTclustered gi|909719645|gb|KT185625.1| 5778 g3494 i0 97.253 1.91489361702128 182 5 97 0 4 185 7048 6867 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 360 309 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
4445679 4445679 PRJNA642647_P_NODE_4064_length_179_cov_1.077465_g4014_i0 PRJNA642647 4064 179 1.077465 1.92866235 Cryptodifflugia oviformis 1165352 Tubulinea other_Eukaryota 326 8.09e-85   NTclustered gi|2517949732|gb|OR125031.1| 1165352 g4014 i0 100 24.4692737430168 176 0 98 0 4 179 199 374 Cryptodifflugia oviformis isolate strain_6 small subunit ribosomal RNA gene, partial sequence blastn 4380 326 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia oviformis
6996540 6996540 PRJNA642647_P_NODE_266_length_685_cov_21.387346_g228_i0 PRJNA642647 266 685 21.387346 146.5033201 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 427 9.72e-115   NTclustered gi|511487963|gb|JX898537.1| 1260765 g228 i0 80.2 19.5445255474453 601 94 86 25 91 682 1 585 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 13388 427 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
9546603 9546603 PRJNA642647_P_NODE_6008_length_156_cov_0.932773_g5958_i0 PRJNA642647 6008 156 0.932773 1.45512588 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 252 1.18e-62   NTclustered gi|909719647|gb|KT185627.1| 5778 g5958 i0 99.281 46.8589743589744 139 1 89 0 16 154 26595 26457 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 7310 252 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
10087068 10087068 PRJNA642647_P_NODE_3468_length_190_cov_2.111111_g3418_i0 PRJNA642647 3468 190 2.111111 4.0111109 Vermamoeba 1260114 Tubulinea other_Eukaryota 182 2e-41   NTclustered gi|300078496|gb|GU001158.1| 5778 g3418 i0 91.667 73.3315789473684 132 9 69 2 57 187 2040 1910 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 13933 182 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
13372018 13372018 PRJNA642647_P_NODE_3411_length_191_cov_4.454545_g3361_i0 PRJNA642647 3411 191 4.454545 8.50818095 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 348 1.87e-91   NTclustered gi|909719645|gb|KT185625.1| 5778 g3361 i0 100 87.8534031413613 188 0 98 0 1 188 4857 4670 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 16780 348 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
17736456 17736456 PRJNA642647_P_NODE_2034_length_242_cov_2.360976_g1984_i0 PRJNA642647 2034 242 2.360976 5.71356192 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 261 3.33e-65   NTclustered gi|399764264|gb|JQ271775.1| 1215986 g1984 i0 86.722 88.8264462809917 241 24 96 4 10 242 352 592 Tubulinea group 02 sp. 1HFKJ 18S ribosomal RNA gene, partial sequence blastn 21496 261 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 02 sp. 1HFKJ
19744843 19744843 PRJNA642647_P_NODE_296_length_652_cov_27.918699_g253_i0 PRJNA642647 296 652 27.918699 182.02991748 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 566 1.87e-156   NTclustered gi|511487963|gb|JX898537.1| 1260765 g253 i0 85.231 25.2085889570552 562 70 85 13 91 646 1 555 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 16436 566 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
22295044 22295044 PRJNA642647_P_NODE_118_length_1011_cov_10.422998_g99_i0 PRJNA642647 118 1011 10.422998 105.37650978 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 1029 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g99 i0 97.512 25.6864490603363 603 13 99 2 409 1010 3861 4462 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 25969 1029 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
25384931 25384931 PRJNA642647_P_NODE_260_length_693_cov_9.434451_g222_i0 PRJNA642647 260 693 9.434451 65.38074543 Vermamoeba 1260114 Tubulinea other_Eukaryota 1236 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g222 i0 98.986 99.5007215007215 690 7 99 0 1 690 5574 4885 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 68954 1236 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;