RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA642647", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 7 ✖

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJNA642647 · 7 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1894209 1894209 PRJNA642647_P_NODE_3602_length_187_cov_2.053333_g3552_i0 PRJNA642647 3602 187 2.053333 3.83973271 Vannella sp. ACN1 1215628 Discosea other_Eukaryota 329 6.6e-86   NTclustered gi|399764213|gb|JQ271724.1| 1215628 g3552 i0 98.396 101.112299465241 187 3 100 0 1 187 1246 1060 Vannella sp. ACN1 18S ribosomal RNA gene, partial sequence blastn 18908 329 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. ACN1
13372044 13372044 PRJNA642647_P_NODE_5931_length_156_cov_4.000000_g5881_i0 PRJNA642647 5931 156 4 6.24 Vannella septentrionalis 197531 Discosea other_Eukaryota 217 4.309999999999999e-52   NTclustered gi|300078499|gb|GU001161.1| 197531 g5881 i0 92.308 1.42307692307692 156 7 98 5 1 153 3617 3464 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 222 217 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
15920834 15920834 PRJNA642647_P_NODE_2233_length_229_cov_9.223958_g2183_i0 PRJNA642647 2233 229 9.223958 21.12286382 Vexilliferidae sp. 107MAR 338730 Discosea other_Eukaryota 392 1.0599999999999999e-104   NTclustered gi|73623529|gb|DQ087330.1| 338730 g2183 i0 99.535 73.4148471615721 215 1 94 0 12 226 225 11 Vexilliferidae sp. 107MAR 18S ribosomal RNA gene, partial sequence blastn 16812 392 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae   Vexilliferidae sp. 107MAR
17195914 17195914 PRJNA642647_P_NODE_1354_length_301_cov_2.837121_g1304_i0 PRJNA642647 1354 301 2.837121 8.53973421 Vannella sp. 1973054 Discosea other_Eukaryota 182 3.42e-41   NTclustered gi|2169663314|gb|OL989990.1| 1973054 g1304 i0 89.51 43.7176079734219 143 15 48 0 60 202 1635 1777 Vannella sp. isolate P147 small subunit ribosomal RNA gene, partial sequence blastn 13159 182 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp.
18470230 18470230 PRJNA642647_P_NODE_3135_length_198_cov_4.118012_g3085_i0 PRJNA642647 3135 198 4.118012 8.15366376 Vannella septentrionalis 197531 Discosea other_Eukaryota 97.1 7.82e-16   NTclustered gi|300078499|gb|GU001161.1| 197531 g3085 i0 98.182 12.489898989899 55 1 28 0 144 198 3086 3140 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 2473 97.1 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
19010057 19010057 PRJNA642647_P_NODE_4095_length_178_cov_2.042553_g4045_i0 PRJNA642647 4095 178 2.042553 3.63574434 Cochliopodium 313557 Discosea other_Eukaryota 313 6.259999999999999e-81   NTclustered gi|659103902|gb|KJ569713.1| 313997 g4045 i0 98.324 39.2921348314607 179 2 100 1 1 178 229 407 Cochliopodium minus clone 1101 18S ribosomal RNA gene, partial sequence blastn 6994 313 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
24844318 24844318 PRJNA642647_P_NODE_3660_length_186_cov_1.295302_g3610_i0 PRJNA642647 3660 186 1.295302 2.40926172 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 95.3 2.6e-15   NTclustered gi|300078498|gb|GU001160.1| 5755 g3610 i0 93.651 31.7741935483871 63 4 34 0 6 68 7553 7615 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 5910 95.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;