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contig_metadata

26 rows where bioproject = "PRJNA642647" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 26 ✖

bioproject 1

  • PRJNA642647 · 26 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1894209 1894209 PRJNA642647_P_NODE_3602_length_187_cov_2.053333_g3552_i0 PRJNA642647 3602 187 2.053333 3.83973271 Vannella sp. ACN1 1215628 Discosea other_Eukaryota 329 6.6e-86   NTclustered gi|399764213|gb|JQ271724.1| 1215628 g3552 i0 98.396 101.112299465241 187 3 100 0 1 187 1246 1060 Vannella sp. ACN1 18S ribosomal RNA gene, partial sequence blastn 18908 329 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. ACN1
1894217 1894217 PRJNA642647_P_NODE_462_length_513_cov_36.472689_g413_i0 PRJNA642647 462 513 36.472689 187.10489457 Amoebozoa sp. SZA19 1089205 Root_unresolved Root_unresolved 852 0   NTclustered gi|441475832|emb|FN562422.4| 1089205 g413 i0 96.863 27.9083820662768 510 11 99 5 1 509 579 74 Amoebozoa sp. SZA19 18S rRNA gene, isolate SZA19 blastn 14317 852 1 Eukaryota Amoebozoa             Amoebozoa sp. SZA19
2433719 2433719 PRJNA642647_P_NODE_2082_length_238_cov_11.407960_g2032_i0 PRJNA642647 2082 238 11.40796 27.1509448 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 401 1.8399999999999994e-107   NTclustered gi|407369295|emb|FN562418.1| 688082 g2032 i0 97.458 75.1260504201681 236 4 99 2 4 238 1101 867 Amoebozoa sp. Pa17 partial 18S rRNA gene, isolate Pa17 blastn 17880 401 1 Eukaryota Amoebozoa             Amoebozoa sp. Pa17
3710342 3710342 PRJNA642647_P_NODE_2043_length_241_cov_4.872549_g1993_i0 PRJNA642647 2043 241 4.872549 11.74284309 Tubulinea 555369 Tubulinea other_Eukaryota 435 1.84e-117   NTclustered gi|399764177|gb|JQ271688.1| 5778 g1993 i0 100 97.49377593361 235 0 98 0 4 238 139 373 Hartmannella vermiformis strain ECH26 18S ribosomal RNA gene, partial sequence blastn 23496 435 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
4445677 4445677 PRJNA642647_P_NODE_3544_length_188_cov_3.238411_g3494_i0 PRJNA642647 3544 188 3.238411 6.08821268 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 309 8.66e-80   NTclustered gi|909719645|gb|KT185625.1| 5778 g3494 i0 97.253 1.91489361702128 182 5 97 0 4 185 7048 6867 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 360 309 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
4445679 4445679 PRJNA642647_P_NODE_4064_length_179_cov_1.077465_g4014_i0 PRJNA642647 4064 179 1.077465 1.92866235 Cryptodifflugia oviformis 1165352 Tubulinea other_Eukaryota 326 8.09e-85   NTclustered gi|2517949732|gb|OR125031.1| 1165352 g4014 i0 100 24.4692737430168 176 0 98 0 4 179 199 374 Cryptodifflugia oviformis isolate strain_6 small subunit ribosomal RNA gene, partial sequence blastn 4380 326 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia oviformis
4986905 4986905 PRJNA642647_P_NODE_324_length_621_cov_30.515411_g278_i0 PRJNA642647 324 621 30.515411 189.50070231 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 926 0   NTclustered gi|441475833|emb|FN562425.4| 688089 g278 i0 93.71 26.2898550724638 620 33 99 6 1 617 619 3 Amoebozoa sp. SZA36 18S rRNA gene, isolate SZA36 blastn 16326 929 0.996770721205597 Eukaryota Amoebozoa             Amoebozoa sp. SZA36
6996540 6996540 PRJNA642647_P_NODE_266_length_685_cov_21.387346_g228_i0 PRJNA642647 266 685 21.387346 146.5033201 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 427 9.72e-115   NTclustered gi|511487963|gb|JX898537.1| 1260765 g228 i0 80.2 19.5445255474453 601 94 86 25 91 682 1 585 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 13388 427 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
9546563 9546563 PRJNA642647_P_NODE_2428_length_221_cov_2.576087_g2378_i0 PRJNA642647 2428 221 2.576087 5.69315227 Squamamoeba japonica 1167875 Evosea other_Eukaryota 137 5.26e-28   NTclustered gi|381423465|gb|JN638030.1| 1167875 g2378 i0 80.311 41.316742081448 193 28 83 5 1 184 2062 1871 Squamamoeba japonica strain CCAP 1593/1 clone 2218 18S ribosomal RNA gene, partial sequence blastn 9131 137 1 Eukaryota Amoebozoa   Evosea       Squamamoeba Squamamoeba japonica
9546603 9546603 PRJNA642647_P_NODE_6008_length_156_cov_0.932773_g5958_i0 PRJNA642647 6008 156 0.932773 1.45512588 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 252 1.18e-62   NTclustered gi|909719647|gb|KT185627.1| 5778 g5958 i0 99.281 46.8589743589744 139 1 89 0 16 154 26595 26457 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 7310 252 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
10087068 10087068 PRJNA642647_P_NODE_3468_length_190_cov_2.111111_g3418_i0 PRJNA642647 3468 190 2.111111 4.0111109 Vermamoeba 1260114 Tubulinea other_Eukaryota 182 2e-41   NTclustered gi|300078496|gb|GU001158.1| 5778 g3418 i0 91.667 73.3315789473684 132 9 69 2 57 187 2040 1910 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 13933 182 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
13372009 13372009 PRJNA642647_P_NODE_2831_length_207_cov_1.747059_g2781_i0 PRJNA642647 2831 207 1.747059 3.61641213 Armaparvus browni 3387425 Evosea other_Eukaryota 69.4 1.8e-7   NTclustered gi|2871328632|gb|PQ778044.1| 3387425 g2781 i0 93.478 6.96135265700483 46 3 22 0 1 46 1227 1182 Armaparvus browni strain ZIN.2023.15 small subunit ribosomal RNA gene, partial sequence blastn 1441 69.4 1 Eukaryota Amoebozoa   Evosea       Armaparvus Armaparvus browni
13372018 13372018 PRJNA642647_P_NODE_3411_length_191_cov_4.454545_g3361_i0 PRJNA642647 3411 191 4.454545 8.50818095 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 348 1.87e-91   NTclustered gi|909719645|gb|KT185625.1| 5778 g3361 i0 100 87.8534031413613 188 0 98 0 1 188 4857 4670 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 16780 348 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
13372044 13372044 PRJNA642647_P_NODE_5931_length_156_cov_4.000000_g5881_i0 PRJNA642647 5931 156 4 6.24 Vannella septentrionalis 197531 Discosea other_Eukaryota 217 4.309999999999999e-52   NTclustered gi|300078499|gb|GU001161.1| 197531 g5881 i0 92.308 1.42307692307692 156 7 98 5 1 153 3617 3464 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 222 217 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
15920834 15920834 PRJNA642647_P_NODE_2233_length_229_cov_9.223958_g2183_i0 PRJNA642647 2233 229 9.223958 21.12286382 Vexilliferidae sp. 107MAR 338730 Discosea other_Eukaryota 392 1.0599999999999999e-104   NTclustered gi|73623529|gb|DQ087330.1| 338730 g2183 i0 99.535 73.4148471615721 215 1 94 0 12 226 225 11 Vexilliferidae sp. 107MAR 18S ribosomal RNA gene, partial sequence blastn 16812 392 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae   Vexilliferidae sp. 107MAR
15920841 15920841 PRJNA642647_P_NODE_2833_length_207_cov_1.705882_g2783_i0 PRJNA642647 2833 207 1.705882 3.53117574 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 363 7.369999999999998e-96   NTclustered gi|507138087|gb|KC583131.1| 590481 g2783 i0 99.01 93.6086956521739 202 2 98 0 4 205 229 430 Uncultured Amoebozoa clone RS.01f.10m.23 18S ribosomal RNA gene, partial sequence blastn 19377 363 1 Eukaryota Amoebozoa             uncultured Amoebozoa
17195914 17195914 PRJNA642647_P_NODE_1354_length_301_cov_2.837121_g1304_i0 PRJNA642647 1354 301 2.837121 8.53973421 Vannella sp. 1973054 Discosea other_Eukaryota 182 3.42e-41   NTclustered gi|2169663314|gb|OL989990.1| 1973054 g1304 i0 89.51 43.7176079734219 143 15 48 0 60 202 1635 1777 Vannella sp. isolate P147 small subunit ribosomal RNA gene, partial sequence blastn 13159 182 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp.
17736454 17736454 PRJNA642647_P_NODE_174_length_857_cov_36.460976_g146_i0 PRJNA642647 174 857 36.460976 312.47056432 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 1199 0   NTclustered gi|441475833|emb|FN562425.4| 688089 g146 i0 92.042 35.343057176196 867 46 99 15 1 855 305 1160 Amoebozoa sp. SZA36 18S rRNA gene, isolate SZA36 blastn 30289 1203 0.99667497921862 Eukaryota Amoebozoa             Amoebozoa sp. SZA36
17736456 17736456 PRJNA642647_P_NODE_2034_length_242_cov_2.360976_g1984_i0 PRJNA642647 2034 242 2.360976 5.71356192 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 261 3.33e-65   NTclustered gi|399764264|gb|JQ271775.1| 1215986 g1984 i0 86.722 88.8264462809917 241 24 96 4 10 242 352 592 Tubulinea group 02 sp. 1HFKJ 18S ribosomal RNA gene, partial sequence blastn 21496 261 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 02 sp. 1HFKJ
18470230 18470230 PRJNA642647_P_NODE_3135_length_198_cov_4.118012_g3085_i0 PRJNA642647 3135 198 4.118012 8.15366376 Vannella septentrionalis 197531 Discosea other_Eukaryota 97.1 7.82e-16   NTclustered gi|300078499|gb|GU001161.1| 197531 g3085 i0 98.182 12.489898989899 55 1 28 0 144 198 3086 3140 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 2473 97.1 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
19010057 19010057 PRJNA642647_P_NODE_4095_length_178_cov_2.042553_g4045_i0 PRJNA642647 4095 178 2.042553 3.63574434 Cochliopodium 313557 Discosea other_Eukaryota 313 6.259999999999999e-81   NTclustered gi|659103902|gb|KJ569713.1| 313997 g4045 i0 98.324 39.2921348314607 179 2 100 1 1 178 229 407 Cochliopodium minus clone 1101 18S ribosomal RNA gene, partial sequence blastn 6994 313 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
19744831 19744831 PRJNA642647_P_NODE_176_length_854_cov_36.632803_g148_i0 PRJNA642647 176 854 36.632803 312.84413762 Amoebozoa sp. SZA19 1089205 Root_unresolved Root_unresolved 1339 0   NTclustered gi|441475832|emb|FN562422.4| 1089205 g148 i0 94.977 34.2002341920375 856 35 99 8 3 854 1117 266 Amoebozoa sp. SZA19 18S rRNA gene, isolate SZA19 blastn 29207 1339 1 Eukaryota Amoebozoa             Amoebozoa sp. SZA19
19744843 19744843 PRJNA642647_P_NODE_296_length_652_cov_27.918699_g253_i0 PRJNA642647 296 652 27.918699 182.02991748 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 566 1.87e-156   NTclustered gi|511487963|gb|JX898537.1| 1260765 g253 i0 85.231 25.2085889570552 562 70 85 13 91 646 1 555 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 16436 566 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
22295044 22295044 PRJNA642647_P_NODE_118_length_1011_cov_10.422998_g99_i0 PRJNA642647 118 1011 10.422998 105.37650978 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 1029 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g99 i0 97.512 25.6864490603363 603 13 99 2 409 1010 3861 4462 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 25969 1029 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
24844318 24844318 PRJNA642647_P_NODE_3660_length_186_cov_1.295302_g3610_i0 PRJNA642647 3660 186 1.295302 2.40926172 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 95.3 2.6e-15   NTclustered gi|300078498|gb|GU001160.1| 5755 g3610 i0 93.651 31.7741935483871 63 4 34 0 6 68 7553 7615 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 5910 95.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
25384931 25384931 PRJNA642647_P_NODE_260_length_693_cov_9.434451_g222_i0 PRJNA642647 260 693 9.434451 65.38074543 Vermamoeba 1260114 Tubulinea other_Eukaryota 1236 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g222 i0 98.986 99.5007215007215 690 7 99 0 1 690 5574 4885 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 68954 1236 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;