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contig_metadata

17 rows where bioproject = "PRJNA641991" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 17 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA641991 · 17 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1893959 1893959 PRJNA641991_P_NODE_1142_length_305_cov_1.957031_g1101_i0 PRJNA641991 1142 305 1.957031 5.96894455 Strongyloides papillosus 174720 Nematoda Nematoda 62.1 4.72e-5   NTclustered gi|687022644|emb|LM525558.1| 174720 g1101 i0 97.222 0.118032786885246 36 1 12 0 270 305 210008 209973 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000004 blastn 36 62.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
1894000 1894000 PRJNA641991_S_NODE_3042_length_301_cov_7.130952_g2923_i0 PRJNA641991 3042 301 7.130952 21.46416552 Auanema freiburgensis 1963013 Nematoda Nematoda 52.8 0.028   NTclustered gi|1527173533|gb|MH124555.1| 1963013 g2923 i0 100 0.0930232558139535 28 0 9 0 70 97 12755 12728 Auanema freiburgensis strain APS7 UNC-22 (unc-22) mRNA, partial cds blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Auanema Auanema freiburgensis
3168651 3168651 PRJNA641991_S_NODE_9183_length_186_cov_1.861314_g9064_i0 PRJNA641991 9183 186 1.861314 3.46204404 Auanema sp. JU1783 2878363 Nematoda Nematoda 93.6 1.11e-22   NR CAI4225746.1 2878363 g9064 i0 76.9 11.6774193548387 65 11 98.4 1 1 183 43 107 CAI4225746.1 unnamed protein product [Auanema sp. JU1783] diamond 2172 93.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Auanema Auanema sp. JU1783
6996350 6996350 PRJNA641991_S_NODE_4806_length_244_cov_2.323077_g4687_i0 PRJNA641991 4806 244 2.323077 5.66830788 Metazoa 33208 Nematoda Nematoda 159 3.3399999999999998e-43   NR VDM39802.1 6265 g4687 i0 97.5 147.393442622951 81 2 99.6 0 2 244 310 390 VDM39802.1 unnamed protein product [Toxocara canis] diamond 35964 160 0.99375 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
8271031 8271031 PRJNA641991_S_NODE_13227_length_164_cov_1.330435_g13108_i0 PRJNA641991 13227 164 1.330435 2.1819134 Strongyloides ratti 34506 Nematoda Nematoda 158 2.82e-34   NTclustered gi|1376156977|ref|XM_024645910.1| 34506 g13108 i0 84.242 12.4085365853659 165 22 99 4 2 164 808 970 Strongyloides ratti RE01104p (SRAE_0000006900), partial mRNA blastn 2035 158 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
10086925 10086925 PRJNA641991_S_NODE_7268_length_205_cov_1.628205_g7149_i0 PRJNA641991 7268 205 1.628205 3.33782025 Metazoa 33208 Nematoda Nematoda 136 6.03e-39   NR XP_003380006.1 6334 g7149 i0 95.5 32.3707317073171 67 3 98 0 5 205 59 125 XP_003380006.1 40S ribosomal protein S23 [Trichinella spiralis] diamond 6636 137 0.992700729927007 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
10822036 10822036 PRJNA641991_S_NODE_8909_length_189_cov_0.878571_g8790_i0 PRJNA641991 8909 189 0.878571 1.66049919 Strongyloides ratti 34506 Nematoda Nematoda 126 9.419999999999999e-25   NTclustered gi|1376148363|ref|XM_024654883.1| 34506 g8790 i0 79.679 1.98412698412698 187 28 96 9 8 189 4955 4774 Strongyloides ratti Myosin heavy chain (SRAE_2000366400), partial mRNA blastn 375 126 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
17195727 17195727 PRJNA641991_S_NODE_4534_length_251_cov_1.108911_g4415_i0 PRJNA641991 4534 251 1.108911 2.78336661 Bursaphelenchus xylophilus 6326 Nematoda Nematoda 220 5.89e-53   NTclustered gi|270309007|dbj|AB500146.1| 6326 g4415 i0 82.47 102.302788844622 251 44 100 0 1 251 871 1121 Bursaphelenchus xylophilus Bx_act1 mRNA for actin, complete cds blastn 25678 220 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
24844094 24844094 PRJNA641991_S_NODE_12200_length_167_cov_0.864407_g12081_i0 PRJNA641991 12200 167 0.864407 1.44355969 Caenorhabditis briggsae 6238 Nematoda Nematoda 106 1.06e-18   NTclustered gi|268535627|ref|XM_002632903.1| 6238 g12081 i0 83.929 1.26347305389222 112 16 66 2 44 154 195 85 Caenorhabditis briggsae Protein CBG21705 (CBG21705), partial mRNA blastn 211 106 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
26828243 26828243 PRJNA641991_S_NODE_4261_length_259_cov_0.971429_g4142_i0 PRJNA641991 4261 259 0.971429 2.51600111 Heterodera trifolii 157864 Nematoda Nematoda 47.4 7.3e-4   NR KAL3113153.1 157864 g4142 i0 42.4 0.764478764478765 66 35 74.1 2 65 256 139 203 KAL3113153.1 hypothetical protein niasHT_013389 [Heterodera trifolii] diamond 198 47.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera trifolii
28565536 28565536 PRJNA641991_S_NODE_12987_length_165_cov_0.879310_g12868_i0 PRJNA641991 12987 165 0.87931 1.4508615 Ditylenchus destructor 166010 Nematoda Nematoda 41.2 0.0458   NR KAI1721178.1 166010 g12868 i0 31.7 1.09090909090909 60 27 83.6 1 157 20 1051 1110 KAI1721178.1 JNK-interacting protein leucine zipper II domain-containing protein [Ditylenchus destructor] diamond 180 41.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anguinidae Ditylenchus Ditylenchus destructor
29367292 29367292 PRJNA641991_S_NODE_14589_length_161_cov_1.250000_g14470_i0 PRJNA641991 14589 161 1.25 2.0125 Metazoa 33208 Nematoda Nematoda 46.6 8.86e-5   NR XP_002648286.1 6238 g14470 i0 57.8 24.3726708074534 45 19 83.9 0 4 138 49 93 XP_002648286.1 Protein CBG24443 [Caenorhabditis briggsae] diamond 3924 46.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
29386599 29386599 PRJNA641991_P_NODE_3269_length_167_cov_0.864407_g3228_i0 PRJNA641991 3269 167 0.864407 1.44355969 Bursaphelenchus okinawaensis 465554 Nematoda Nematoda 86.3 2.84e-18   NR CAD5207346.1 465554 g3228 i0 70.6 5.69461077844311 51 15 91.6 0 154 2 266 316 CAD5207346.1 unnamed protein product [Bursaphelenchus okinawaensis] diamond 951 86.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus okinawaensis
30725400 30725400 PRJNA641991_P_NODE_3154_length_169_cov_1.275000_g3113_i0 PRJNA641991 3154 169 1.275 2.15475 Metazoa 33208 Nematoda Nematoda 79.7 1.18e-16   NR KHN89102.1 6265 g3113 i0 69.4 27.0177514792899 49 15 87 0 167 21 103 151 KHN89102.1 Putative 40S ribosomal protein S10-like [Toxocara canis] diamond 4566 80.5 0.990062111801242 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
31946011 31946011 PRJNA641991_S_NODE_11877_length_167_cov_1.398305_g11758_i0 PRJNA641991 11877 167 1.398305 2.33516935 Diploscapter pachys 2018661 Nematoda Nematoda 54.3 1.11e-6   NR PAV61068.1 2018661 g11758 i0 69 2.65868263473054 29 9 52.1 0 159 73 1536 1564 PAV61068.1 hypothetical protein WR25_21743 [Diploscapter pachys] diamond 444 54.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter pachys
32072790 32072790 PRJNA641991_S_NODE_13898_length_163_cov_0.894737_g13779_i0 PRJNA641991 13898 163 0.894737 1.45842131 Enterobius vermicularis 51028 Nematoda Nematoda 42.7 0.0129   NR VDD91021.1 51028 g13779 i0 43.6 3.69938650306748 39 22 71.8 0 43 159 7 45 VDD91021.1 unnamed protein product [Enterobius vermicularis] diamond 603 42.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Oxyuridae Enterobius Enterobius vermicularis
32306878 32306878 PRJNA641991_S_NODE_9879_length_181_cov_1.159091_g9760_i0 PRJNA641991 9879 181 1.159091 2.09795471 root 1 Root_unresolved Root_unresolved 90.5 1.43e-19   NR CAD5234645.1 6326 g9760 i0 69.5 24.4475138121547 59 18 97.8 0 3 179 209 267 CAD5234645.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 4425 90.9 0.995599559955996 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;