RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA641991", tax_phylum = "Chloroflexota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA641991 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19744635 19744635 PRJNA641991_S_NODE_4376_length_255_cov_1.723301_g4257_i0 PRJNA641991 4376 255 1.723301 4.39441755 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 52.8 0.023   NTclustered gi|2621704807|emb|OY763072.1| 2026734 g4257 i0 100 0.109803921568627 28 0 11 0 142 169 3446192 3446219 MAG: Dehalococcoidia bacterium isolate 40e540cc-5106-4b3b-ab2b-631d7f64572a genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
27618469 27618469 PRJNA641991_S_NODE_10624_length_175_cov_1.619048_g10505_i0 PRJNA641991 10624 175 1.619048 2.833334 Candidatus Limnocylindrales bacterium 2952938 Bacteria Bacteria 57.4 1.51e-8   NR HYI21055.1 2952938 g10505 i0 52.6 0.977142857142857 57 26 96 1 173 6 56 112 HYI21055.1 hypothetical protein [Candidatus Limnocylindrales bacterium] diamond 171 57.4 1 Bacteria   Bacillati Chloroflexota Candidatus Limnocylindria Candidatus Limnocylindrales     Candidatus Limnocylindrales bacterium
30851796 30851796 PRJNA641991_S_NODE_6534_length_215_cov_1.228916_g6415_i0 PRJNA641991 6534 215 1.228916 2.6421694 Anaerolinea 233189 Bacteria Bacteria 97.1 1.9600000000000003e-21   NR WP_070105127.1 167964 g6415 i0 74.3 3.90697674418605 70 18 97.7 0 2 211 310 379 WP_070105127.1 fasciclin domain-containing protein [Anaerolinea thermophila] diamond 840 97.1 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales Anaerolineaceae Anaerolinea Anaerolinea thermophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;