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contig_metadata

13 rows where bioproject = "PRJNA641991", tax_phylum = "Actinomycetota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 13 ✖

tax_phylum 1

  • Actinomycetota · 13 ✖

tax_kingdom 1

bioproject 1

  • PRJNA641991 · 13 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4986759 4986759 PRJNA641991_S_NODE_13104_length_165_cov_0.879310_g12985_i0 PRJNA641991 13104 165 0.87931 1.4508615 Cutibacterium 1912216 Bacteria Bacteria 294 2.08e-75   NTclustered gi|1446500593|gb|CP031442.1| 1747 g12985 i0 100 51.0727272727273 159 0 96 0 1 159 845935 846093 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 8427 294 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
15186873 15186873 PRJNA641991_S_NODE_9512_length_184_cov_0.844444_g9393_i0 PRJNA641991 9512 184 0.844444 1.55377696 Rhodococcus 1827 Bacteria Bacteria 54.7 0.004   NTclustered gi|2088797821|gb|CP082159.1| 37919 g9393 i0 100 2.6195652173913 29 0 16 0 91 119 184193 184221 Rhodococcus opacus strain DSM 44186 plasmid pRop44186_a, complete sequence blastn 482 54.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus opacus
15920611 15920611 PRJNA641991_S_NODE_13293_length_164_cov_0.886957_g13174_i0 PRJNA641991 13293 164 0.886957 1.45460948 Streptomyces malaysiensis 92644 Bacteria Bacteria 52.8 0.014   NTclustered gi|2619783426|gb|CP137895.1| 92644 g13174 i0 100 0.170731707317073 28 0 17 0 17 44 7943397 7943370 Streptomyces malaysiensis strain NA3722 chromosome, complete genome blastn 28 52.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces malaysiensis
19744612 19744612 PRJNA641991_S_NODE_12036_length_167_cov_0.864407_g11917_i0 PRJNA641991 12036 167 0.864407 1.44355969 Tsukamurella tyrosinosolvens 57704 Bacteria Bacteria 292 7.58e-75   NTclustered gi|1540130960|emb|LR134451.1| 57704 g11917 i0 98.204 9.65269461077844 167 3 100 0 1 167 74127 73961 Tsukamurella tyrosinosolvens strain NCTC13231 genome assembly, plasmid: 9 blastn 1612 292 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Tsukamurellaceae Tsukamurella Tsukamurella tyrosinosolvens
24110287 24110287 PRJNA641991_S_NODE_5919_length_224_cov_1.165714_g5800_i0 PRJNA641991 5919 224 1.165714 2.61119936 Streptomyces 1883 Bacteria Bacteria 56.5 0.002   NTclustered gi|2015360468|gb|CP071839.1| 80860 g5800 i0 92.308 0.758928571428571 39 3 17 0 31 69 1621424 1621386 Streptomyces cyanogenus strain S136 chromosome, complete genome blastn 170 56.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces cyanogenus
27144043 27144043 PRJNA641991_S_NODE_9362_length_185_cov_1.073529_g9243_i0 PRJNA641991 9362 185 1.073529 1.98602865 Collinsella sp. 1965294 Bacteria Bacteria 40 0.0342   NR MFR3450459.1 1965294 g9243 i0 37.3 0.827027027027027 51 31 82.7 1 3 155 9 58 MFR3450459.1 hypothetical protein [Collinsella sp.] diamond 153 40 1 Bacteria   Bacillati Actinomycetota Coriobacteriia Coriobacteriales Coriobacteriaceae Collinsella Collinsella sp.
27870822 27870822 PRJNA641991_S_NODE_11825_length_167_cov_2.906780_g11706_i0 PRJNA641991 11825 167 2.90678 4.8543226 Aquihabitans sp. G128 2849779 Bacteria Bacteria 43.5 0.00704   NR WP_216998947.1 2849779 g11706 i0 41.7 1.07784431137725 60 19 80.8 2 29 163 210 268 WP_216998947.1 methionyl-tRNA formyltransferase [Aquihabitans sp. G128] diamond 180 43.5 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales Iamiaceae Aquihabitans Aquihabitans sp. G128
28072596 28072596 PRJNA641991_S_NODE_5065_length_239_cov_1.326316_g4946_i0 PRJNA641991 5065 239 1.326316 3.16989524 FCB group 1783270 Bacteria Bacteria 97.1 1.1e-23   NR WP_285918567.1 604315 g4946 i0 58.6 7.05439330543933 70 28 87.9 1 16 225 40 108 WP_285918567.1 Mth938-like domain-containing protein [Actinomadura sp. OS1-43] diamond 1686 97.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura sp. OS1-43
28798669 28798669 PRJNA641991_S_NODE_14847_length_161_cov_0.910714_g14728_i0 PRJNA641991 14847 161 0.910714 1.46624954 root 1 Root_unresolved Root_unresolved 43.1 0.00898   NR HEU5005883.1 2811413 g14728 i0 37.5 5.18012422360248 48 30 89.4 0 9 152 234 281 HEU5005883.1 ATP-binding protein [Jatrophihabitantaceae bacterium] diamond 834 43.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Jatrophihabitantales Jatrophihabitantaceae   Jatrophihabitantaceae bacterium
29102439 29102439 PRJNA641991_S_NODE_10368_length_177_cov_1.593750_g10249_i0 PRJNA641991 10368 177 1.59375 2.8209375 Kineosporiaceae bacterium 2487580 Bacteria Bacteria 60.5 7.92e-9   NR HVN12469.1 2487580 g10249 i0 57.1 3.64406779661017 56 23 94.9 1 3 170 300 354 HVN12469.1 trypsin-like peptidase domain-containing protein [Kineosporiaceae bacterium] diamond 645 60.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kineosporiales Kineosporiaceae   Kineosporiaceae bacterium
31060960 31060960 PRJNA641991_P_NODE_2895_length_178_cov_0.875969_g2854_i0 PRJNA641991 2895 178 0.875969 1.55922482 Actinokineospora sp. UTMC 2448 2268449 Bacteria Bacteria 41.6 0.0403   NR UVS78122.1 2268449 g2854 i0 51.4 0.623595505617977 37 16 59 1 68 172 77 113 UVS78122.1 hypothetical protein Actkin_01846 [Actinokineospora sp. UTMC 2448] diamond 111 41.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinokineospora Actinokineospora sp. UTMC 2448
32072791 32072791 PRJNA641991_S_NODE_14158_length_162_cov_1.123894_g14039_i0 PRJNA641991 14158 162 1.123894 1.82070828 Streptomyces sp. NRRL F-5727 1463871 Bacteria Bacteria 43.5 0.00684   NR WP_051716732.1 1463871 g14039 i0 45.1 1.88888888888889 51 26 94.4 1 4 156 322 370 WP_051716732.1 MATE family efflux transporter [Streptomyces sp. NRRL F-5727] diamond 306 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NRRL F-5727
32389152 32389152 PRJNA641991_P_NODE_3379_length_166_cov_0.871795_g3338_i0 PRJNA641991 3379 166 0.871795 1.4471797 Corynebacterium dentalis 2014528 Bacteria Bacteria 41.2 0.0465   NR WP_312097338.1 2014528 g3338 i0 73.9 0.41566265060241 23 6 41.6 0 70 2 1 23 WP_312097338.1 esterase/lipase family protein [Corynebacterium dentalis] diamond 69 41.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium dentalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;