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contig_metadata

14 rows where bioproject = "PRJNA641991", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 14 ✖

tax_clade 1

  • Sar · 14 ✖

bioproject 1

  • PRJNA641991 · 14 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
617757 617757 PRJNA641991_S_NODE_13821_length_163_cov_0.894737_g13702_i0 PRJNA641991 13821 163 0.894737 1.45842131 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 60.2 8.12e-5   NTclustered gi|2795027405|ref|XM_067926264.1| 4785 g13702 i0 100 3.85889570552147 32 0 20 0 8 39 1478 1447 Phytophthora cinnamomi putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin (IUM83_02354), partial mRNA blastn 629 60.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
6262081 6262081 PRJNA641991_S_NODE_1225_length_475_cov_9.889671_g1106_i0 PRJNA641991 1225 475 9.889671 46.97593725 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 233 1.5399999999999998e-56   NTclustered gi|166301|gb|J05597.1|ACKBTUB 4767 g1106 i0 87.081 41.9642105263158 209 23 44 4 1 207 1331 1537 A.klebsiana beta-tubulin gene, complete cds blastn 19933 235 0.991489361702128 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya klebsiana
6996316 6996316 PRJNA641991_S_NODE_10866_length_173_cov_4.330645_g10747_i0 PRJNA641991 10866 173 4.330645 7.49201585 Lagenidium sp. SL10 1702235 SAR_Eukaryotes SAR_Eukaryotes 165 1.79e-36   NTclustered gi|918464445|gb|KT257536.1| 1702235 g10747 i0 84.431 27.1156069364162 167 26 97 0 7 173 315 149 Lagenidium sp. SL10 isolate LEV5850 beta-tubulin gene, partial cds blastn 4691 165 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium sp. SL10
13371794 13371794 PRJNA641991_P_NODE_751_length_399_cov_1.391429_g710_i0 PRJNA641991 751 399 1.391429 5.55180171 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 161 6.09e-35   NTclustered gi|673024575|ref|XM_008868027.1| 157072 g710 i0 89.764 33.7142857142857 127 12 32 1 4 129 2262 2388 Aphanomyces invadans tubulin beta chain mRNA blastn 13452 161 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
15920664 15920664 PRJNA641991_S_NODE_9213_length_186_cov_1.299270_g9094_i0 PRJNA641991 9213 186 1.29927 2.4166422 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 220 4.12e-53   NTclustered gi|675203540|ref|XM_008912407.1| 761204 g9094 i0 88.462 78.747311827957 182 21 98 0 4 185 397 216 Phytophthora parasitica INRA-310 actin-1 mRNA blastn 14647 220 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
16461197 16461197 PRJNA641991_S_NODE_14553_length_161_cov_1.366071_g14434_i0 PRJNA641991 14553 161 1.366071 2.19937431 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 99 1.69e-16   NTclustered gi|2248513400|ref|NC_063804.1| 4784 g14434 i0 83.654 6.4472049689441 104 17 65 0 3 106 17471 17368 Phytophthora capsici isolate TaiwanPc33e mitochondrion, complete genome blastn 1038 99 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
21560366 21560366 PRJNA641991_S_NODE_1117_length_502_cov_18.938190_g998_i0 PRJNA641991 1117 502 18.93819 95.0697138 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 233 1.63e-56   NTclustered gi|166301|gb|J05597.1|ACKBTUB 4767 g998 i0 87.081 39.6334661354582 209 23 41 4 296 502 1537 1331 A.klebsiana beta-tubulin gene, complete cds blastn 19896 235 0.991489361702128 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya klebsiana
23570496 23570496 PRJNA641991_S_NODE_2779_length_316_cov_1.501873_g2660_i0 PRJNA641991 2779 316 1.501873 4.74591868 Phytophthora boehmeriae 109152 SAR_Eukaryotes SAR_Eukaryotes 283 9.64e-72   NTclustered gi|1133565931|gb|KU518486.1| 109152 g2660 i0 83.226 95.7088607594937 310 50 98 2 8 316 330 22 Phytophthora boehmeriae strain OCPC27 translation elongation factor 1-alpha gene, partial cds blastn 30244 283 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora boehmeriae
28692050 28692050 PRJNA641991_S_NODE_14527_length_161_cov_1.410714_g14408_i0 PRJNA641991 14527 161 1.410714 2.27124954 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 70.9 2.03e-13   NR RHZ07776.1 112090 g14408 i0 56.6 4.93788819875776 53 23 98.8 0 161 3 92 144 RHZ07776.1 hypothetical protein DYB31_012338, partial [Aphanomyces astaci] diamond 795 70.9 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
28735752 28735752 PRJNA641991_S_NODE_14567_length_161_cov_1.366071_g14448_i0 PRJNA641991 14567 161 1.366071 2.19937431 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 69.3 4.95e-12   NR XP_024573891.1 4781 g14448 i0 78 38.1614906832298 41 9 76.4 0 159 37 108 148 XP_024573891.1 60s ribosomal protein l27a [Plasmopara halstedii] diamond 6144 69.7 0.994261119081779 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
28767240 28767240 PRJNA641991_S_NODE_13107_length_165_cov_0.879310_g12988_i0 PRJNA641991 13107 165 0.87931 1.4508615 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 69.7 3.84e-12   NR XP_067785475.1 4785 g12988 i0 63 5.89090909090909 54 14 98.2 1 2 163 362 409 XP_067785475.1 methylmalonate-semialdehyde dehydrogenase (acylating) [Phytophthora cinnamomi] diamond 972 69.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
30429196 30429196 PRJNA641991_S_NODE_9853_length_181_cov_1.431818_g9734_i0 PRJNA641991 9853 181 1.431818 2.59159058 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 85.9 9.91e-18   NR RHY32367.1 157072 g9734 i0 78 2.93370165745856 59 13 97.8 0 3 179 168 226 RHY32367.1 hypothetical protein DYB32_003166 [Aphanomyces invadans] diamond 531 85.9 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
31009791 31009791 PRJNA641991_S_NODE_14794_length_161_cov_0.910714_g14675_i0 PRJNA641991 14794 161 0.910714 1.46624954 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 72 3.62e-14   NR KAF0744732.1 100861 g14675 i0 69.8 5.92546583850932 53 16 98.8 0 159 1 22 74 KAF0744732.1 hypothetical protein Ae201684_001188 [Aphanomyces euteiches] diamond 954 72.4 0.994475138121547 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
32704759 32704759 PRJNA641991_P_NODE_2800_length_181_cov_1.545455_g2759_i0 PRJNA641991 2800 181 1.545455 2.79727355 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 65.9 4.61e-11   NR RHX96559.1 112090 g2759 i0 52.6 4.72375690607735 57 27 94.5 0 3 173 170 226 RHX96559.1 hypothetical protein DYB36_013739, partial [Aphanomyces astaci] diamond 855 65.9 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;