RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA641991", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA641991 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30871117 30871117 PRJNA641991_S_NODE_12634_length_166_cov_0.871795_g12515_i0 PRJNA641991 12634 166 0.871795 1.4471797 Lentisphaerota bacterium 1932692 Bacteria Bacteria 70.5 2.18e-12   NR NLX25304.1 1932692 g12515 i0 57.4 0.975903614457831 54 19 97.6 1 163 2 525 574 NLX25304.1 NADH-quinone oxidoreductase subunit NuoF [Lentisphaerota bacterium] diamond 162 70.5 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
32767803 32767803 PRJNA641991_S_NODE_4800_length_244_cov_2.897436_g4681_i0 PRJNA641991 4800 244 2.897436 7.06974384 uncultured Victivallis sp. 354118 Bacteria Bacteria 42.7 0.0373   NR WP_288610338.1 354118 g4681 i0 31 0.872950819672131 71 49 87.3 0 237 25 124 194 WP_288610338.1 DUF58 domain-containing protein [uncultured Victivallis sp.] diamond 213 42.7 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales Victivallaceae Victivallis uncultured Victivallis sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;