RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA641991", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 7 ✖

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJNA641991 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8271054 8271054 PRJNA641991_S_NODE_4007_length_266_cov_1.175115_g3888_i0 PRJNA641991 4007 266 1.175115 3.1258059 Acanthamoeba healyi 65661 Discosea other_Eukaryota 119 3.8e-30   NR AAL67857.1 65661 g3888 i0 62.1 2.95488721804511 87 33 98.1 0 261 1 174 260 AAL67857.1 cysteine proteinase [Acanthamoeba healyi] diamond 786 119 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba healyi
12097165 12097165 PRJNA641991_S_NODE_11670_length_168_cov_1.957983_g11551_i0 PRJNA641991 11670 168 1.957983 3.28941144 Cochliopodium spiniferum 313558 Discosea other_Eukaryota 150 4.86e-32   NTclustered gi|330902897|gb|JF298273.1| 313558 g11551 i0 83.133 20.3809523809524 166 26 98 2 2 166 199 363 Cochliopodium spiniferum clone 5102 actin gene, partial cds blastn 3424 150 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium spiniferum
27808001 27808001 PRJNA641991_S_NODE_6124_length_221_cov_0.872093_g6005_i0 PRJNA641991 6124 221 0.872093 1.92732553 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 53.9 3.09e-6   NR XP_004341646.1 1257118 g6005 i0 52.1 0.65158371040724 48 20 61.1 1 219 85 335 382 XP_004341646.1 papain family cysteine protease containing protein [Acanthamoeba castellanii str. Neff] diamond 144 53.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27965584 27965584 PRJNA641991_S_NODE_14405_length_162_cov_0.902655_g14286_i0 PRJNA641991 14405 162 0.902655 1.4623011 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 83.2 2.84e-17   NR XP_004341120.1 1257118 g14286 i0 71.7 1.96296296296296 53 15 98.1 0 1 159 105 157 XP_004341120.1 spliceosomal protein, putative [Acanthamoeba castellanii str. Neff] diamond 318 83.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28786388 28786388 PRJNA641991_S_NODE_9227_length_186_cov_1.116788_g9108_i0 PRJNA641991 9227 186 1.116788 2.07722568 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 69.7 5.28e-12   NR XP_004341947.1 1257118 g9108 i0 61.7 2.93548387096774 60 22 96.8 1 182 3 555 613 XP_004341947.1 gelation factor, putative [Acanthamoeba castellanii str. Neff] diamond 546 69.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30744790 30744790 PRJNA641991_S_NODE_5554_length_230_cov_1.408840_g5435_i0 PRJNA641991 5554 230 1.40884 3.240332 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 89 3.64e-20   NR XP_004334891.1 1257118 g5435 i0 58.5 0.847826086956522 65 27 84.8 0 1 195 107 171 XP_004334891.1 ribosomal protein L11, domain containing protein [Acanthamoeba castellanii str. Neff] diamond 195 89 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31471913 31471913 PRJNA641991_S_NODE_14876_length_161_cov_0.910714_g14757_i0 PRJNA641991 14876 161 0.910714 1.46624954 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 65.5 3.36e-11   NR XP_004341316.1 1257118 g14757 i0 59.6 0.875776397515528 47 19 87.6 0 19 159 112 158 XP_004341316.1 proteasome subunit beta type2, putative [Acanthamoeba castellanii str. Neff] diamond 141 65.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;