RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA641707" and tax_phylum = "Candidatus Absconditibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Absconditibacteriota · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA641707 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6989414 6989414 PRJNA641707_P_NODE_106526_length_246_cov_3.355330_g103863_i0 PRJNA641707 106526 246 3.35533 8.2541118 candidate division SR1 bacterium Aalborg_AAW-1 1643353 Bacteria Bacteria 178 3.5099999999999993e-40   NTclustered gi|821340791|gb|CP011268.1| 1643353 g103863 i0 98.99 0.873983739837398 99 1 40 0 146 244 326736 326638 Candidate division SR1 bacterium Aalborg_AAW-1 chromosome, complete genome blastn 215 178 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium Aalborg_AAW-1
9541080 9541080 PRJNA641707_P_NODE_17868_length_515_cov_15.433476_g15432_i0 PRJNA641707 17868 515 15.433476 79.4824014 SR1 bacterium oral taxon 875 1226342 Bacteria Bacteria 815 0   NTclustered gi|402243570|gb|JX294356.1| 1226342 g15432 i0 95.49 88.6679611650485 510 23 99 0 5 514 930 1439 SR1 bacterium oral taxon 875 clone CN01 16S ribosomal RNA gene, partial sequence blastn 45664 815 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         SR1 bacterium oral taxon 875
18469503 18469503 PRJNA641707_P_NODE_795_length_1831_cov_31.172278_g508_i0 PRJNA641707 795 1831 31.172278 570.76441018 candidate division SR1 bacterium RAAC1_SR1_1 1394709 Bacteria Bacteria 1358 0   NTclustered gi|563351663|gb|CP006913.1| 1394709 g508 i0 80.347 109.447842708902 1847 317 99 43 2 1825 126697 124874 Candidate division SR1 bacterium RAAC1_SR1_1 chromosome, complete genome blastn 200399 1358 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium RAAC1_SR1_1
29449189 29449189 PRJNA641707_P_NODE_125330_length_245_cov_3.346939_g122667_i0 PRJNA641707 125330 245 3.346939 8.20000055 candidate division SR1 bacterium 2044938 Bacteria Bacteria 72 1.88e-12   NR MBB1557629.1 2044938 g122667 i0 100 0.808163265306122 33 0 40.4 0 100 2 525 557 MBB1557629.1 S-layer homology domain-containing protein [candidate division SR1 bacterium] diamond 198 72 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium
29765112 29765112 PRJNA641707_P_NODE_267651_length_175_cov_4.523810_g264988_i0 PRJNA641707 267651 175 4.52381 7.9166675 candidate division SR1 bacterium 2044938 Bacteria Bacteria 44.3 0.00439   NR MBB1578605.1 2044938 g264988 i0 45 2.05714285714286 60 29 96 2 2 169 178 237 MBB1578605.1 S-layer homology domain-containing protein [candidate division SR1 bacterium] diamond 360 44.3 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium
31376972 31376972 PRJNA641707_P_NODE_99316_length_246_cov_4.324873_g96653_i0 PRJNA641707 99316 246 4.324873 10.63918758 candidate division SR1 bacterium 2044938 Bacteria Bacteria 68.6 1.58e-11   NR MBB1557189.1 2044938 g96653 i0 100 0.390243902439024 32 0 39 0 240 145 217 248 MBB1557189.1 Ig-like domain-containing protein [candidate division SR1 bacterium] diamond 96 68.6 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;