RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA641707" and tax_phylum = "Calditrichota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Calditrichota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA641707 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3165048 3165048 PRJNA641707_P_NODE_248663_length_183_cov_1.679104_g246000_i0 PRJNA641707 248663 183 1.679104 3.07276032 Bacteria 2 Bacteria Bacteria 99 5.93e-24   NR RMF60485.1 2212469 g246000 i0 81 2.88524590163934 58 11 95.1 0 178 5 119 176 RMF60485.1 MAG: isocitrate lyase, partial [Calditrichota bacterium] diamond 528 100 0.99 Bacteria   Pseudomonadati Calditrichota         Calditrichota bacterium
10819955 10819955 PRJNA641707_P_NODE_313769_length_160_cov_4.783784_g311106_i0 PRJNA641707 313769 160 4.783784 7.6540544 Caldithrix abyssi 187145 Bacteria Bacteria 132 1.6600000000000002e-26   NTclustered gi|1108618394|gb|CP018099.1| 880073 g311106 i0 88.288 274.075 111 12 69 1 11 120 1053468 1053578 Caldithrix abyssi DSM 13497, complete genome blastn 43852 132 1 Bacteria   Pseudomonadati Calditrichota Calditrichia Calditrichales Calditrichaceae Caldithrix Caldithrix abyssi
28281093 28281093 PRJNA641707_P_NODE_267746_length_175_cov_4.301587_g265083_i0 PRJNA641707 267746 175 4.301587 7.52777725 Calditrichota bacterium 2212469 Bacteria Bacteria 46.2 6.75e-4   NR MBM3324946.1 2212469 g265083 i0 45.1 0.874285714285714 51 28 87.4 0 7 159 154 204 MBM3324946.1 hypothetical protein [Calditrichota bacterium] diamond 153 46.2 1 Bacteria   Pseudomonadati Calditrichota         Calditrichota bacterium
30725353 30725353 PRJNA641707_P_NODE_178654_length_200_cov_6.410596_g175991_i0 PRJNA641707 178654 200 6.410596 12.821192 Caldithrix 187144 Bacteria Bacteria 42.4 0.0294   NR TDJ01131.1 1962856 g175991 i0 43.6 1.17 39 21 58.5 1 9 125 657 694 TDJ01131.1 MAG: T9SS type A sorting domain-containing protein [Caldithrix sp.] diamond 234 42.4 1 Bacteria   Pseudomonadati Calditrichota Calditrichia Calditrichales Calditrichaceae Caldithrix Caldithrix sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;