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contig_metadata

9 rows where bioproject = "PRJNA641707" and tax_kingdom = "Pararnavirae"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 9 ✖

bioproject 1

  • PRJNA641707 · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
611935 611935 PRJNA641707_P_NODE_152481_length_233_cov_7.673913_g149818_i0 PRJNA641707 152481 233 7.673913 17.88021729 Gammaretrovirus murleu 3428959 Viruses Viruses 377 3.03e-100   NTclustered gi|996271182|gb|KU324806.1| 11786 g149818 i0 97.297 95.3304721030043 222 6 95 0 1 222 7552 7331 Murine leukemia virus isolate Kyushu, complete genome blastn 22212 377 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
3164320 3164320 PRJNA641707_P_NODE_21723_length_467_cov_7.971292_g19183_i0 PRJNA641707 21723 467 7.971292 37.22593364 Gammaretrovirus murleu 3428959 Viruses Viruses 390 8.47e-104   NTclustered gi|313104661|gb|HQ601959.1| 878322 g19183 i0 100 68.6895074946467 211 0 63 0 257 467 108 318 MLV-related virus CFS isolate MLV003-2010 gag polyprotein (gag) gene, partial cds blastn 32078 390 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
7535740 7535740 PRJNA641707_P_NODE_39446_length_346_cov_14.340067_g36806_i0 PRJNA641707 39446 346 14.340067 49.61663182 root 1 Root_unresolved Root_unresolved 54.7 0.009   NTclustered gi|1798059617|gb|MK687261.1| 11723 g36806 i0 96.97 1.74566473988439 33 0 10 1 271 303 174 205 Simian immunodeficiency virus isolate T158.2_A09 envelope glycoprotein (env) gene, partial cds blastn 604 54.7 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus simimdef
9545968 9545968 PRJNA641707_P_NODE_84928_length_246_cov_6.751269_g82265_i0 PRJNA641707 84928 246 6.751269 16.60812174 Penicillium camemberti virus - GP1 1909350 Viruses Viruses 187 5.839999999999998e-43   NTclustered gi|1080112933|gb|KT833324.1| 1909350 g82265 i0 100 0.800813008130081 101 0 80 0 1 101 4057 3957 Penicillium camemberti virus - GP1, complete genome blastn 197 187 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Pseudoviridae   Penicillium camemberti virus - GP1
22291823 22291823 PRJNA641707_P_NODE_2738_length_1185_cov_53.172535_g27_i3 PRJNA641707 2738 1185 53.172535 630.09453975 Gammaretrovirus murleu 3428959 Viruses Viruses 2050 0   NTclustered gi|2645293235|gb|PP028550.1| 11837 g27 i3 98.049 99.4919831223629 1179 23 99 0 2 1180 2724 1546 Xenotropic murine leukemia virus culture ATCC:VR-1447 putative gag-pro-pol polyprotein gene, partial cds blastn 117898 2050 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
23564723 23564723 PRJNA641707_P_NODE_158399_length_218_cov_9.615385_g155736_i0 PRJNA641707 158399 218 9.615385 20.9615393 Lentivirus simimdef 3418654 Viruses Viruses 60.2 1.15e-4   NTclustered gi|334610|gb|M96204.1|SIVM7004AH 11723 g155736 i0 97.143 14.2798165137615 35 1 16 0 110 144 100 134 Simian immunodeficiency virus (M87004) glycoprotein 120 (env) gene blastn 3113 60.2 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus simimdef
24108448 24108448 PRJNA641707_P_NODE_173819_length_201_cov_3.296053_g171156_i0 PRJNA641707 173819 201 3.296053 6.62506653 root 1 Root_unresolved Root_unresolved 182 2.1399999999999996e-41   NTclustered gi|2727876365|gb|OR256209.1| 69577 g171156 i0 99.01 11.9900497512438 101 1 98 0 101 201 180 80 Banana streak virus isolate GDDGBX1-3 ORFIII-like polyprotein gene, partial cds blastn 2410 182 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Badnavirus Banana streak virus
24840924 24840924 PRJNA641707_P_NODE_266020_length_176_cov_1.763780_g263357_i0 PRJNA641707 266020 176 1.76378 3.1042528 Gammaretrovirus 153135 Viruses Viruses 110 2.88e-26   NR ABU54795.1 11786 g263357 i0 96.5 12.6306818181818 57 2 97.2 0 175 5 1224 1280 ABU54795.1 gag-pro-pol polyprotein [Murine leukemia virus] diamond 2223 110 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
25384546 25384546 PRJNA641707_P_NODE_73860_length_246_cov_20.736041_g71197_i0 PRJNA641707 73860 246 20.736041 51.01066086 root 1 Root_unresolved Root_unresolved 54.7 0.006   NTclustered gi|302393385|dbj|AB553961.1| 11723 g71197 i0 100 7.01219512195122 29 0 12 0 1 29 276 248 Simian immunodeficiency virus gene for envelope glycoprotein, partial cds, clone: Mm0518-22w-9 blastn 1725 54.7 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus simimdef

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;