RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where bioproject = "PRJNA641707", tax_kingdom = "Methanobacteriati" and tax_phylum = "Thermoplasmatota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermoplasmatota · 5 ✖

tax_kingdom 1

  • Methanobacteriati · 5 ✖

bioproject 1

  • PRJNA641707 · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4445196 4445196 PRJNA641707_P_NODE_90604_length_246_cov_5.624365_g87941_i0 PRJNA641707 90604 246 5.624365 13.8359379 Thermoplasmatales archaeon BRNA1 1054217 Archaea Archaea 52.8 0.022   NTclustered gi|472831278|gb|CP002916.1| 1054217 g87941 i0 100 0.113821138211382 28 0 11 0 59 86 3804 3777 Thermoplasmatales archaeon BRNA1, complete genome blastn 28 52.8 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales     Thermoplasmatales archaeon BRNA1
4985611 4985611 PRJNA641707_P_NODE_275684_length_172_cov_3.333333_g273021_i0 PRJNA641707 275684 172 3.333333 5.73333276 Candidatus Methanogranum 1577789 Archaea Archaea 270 3.66e-68   NTclustered gi|1799215713|gb|CP047880.1| 1535962 g273021 i0 95.833 14.5348837209302 168 6 98 1 1 168 1503920 1504086 Methanomassiliicoccaceae archaeon DOK chromosome, complete genome blastn 2500 272 0.992647058823529 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomassiliicoccaceae   Methanomassiliicoccaceae archaeon DOK
8267529 8267529 PRJNA641707_P_NODE_251927_length_181_cov_7.636364_g249264_i0 PRJNA641707 251927 181 7.636364 13.82181884 Candidatus Methanomassiliicoccus intestinalis 1406512 Archaea Archaea 294 2.31e-75   NTclustered gi|1721134172|emb|LR698974.1| 1406512 g249264 i0 96.61 10.6685082872928 177 6 98 0 5 181 1456807 1456631 Candidatus Methanomassiliicoccus intestinalis isolate MGYG-HGUT-02160 genome assembly, chromosome: 1 blastn 1931 294 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomassiliicoccaceae Methanomassiliicoccus Candidatus Methanomassiliicoccus intestinalis
27997253 27997253 PRJNA641707_P_NODE_264685_length_176_cov_5.818898_g262022_i0 PRJNA641707 264685 176 5.818898 10.24126048 Thermoplasmata archaeon 1906666 Archaea Archaea 45.8 0.00123   NR MEM3341491.1 1906666 g262022 i0 69 0.494318181818182 29 9 49.4 0 89 3 61 89 MEM3341491.1 pyruvate kinase [Thermoplasmata archaeon] diamond 87 45.8 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
31155028 31155028 PRJNA641707_P_NODE_238635_length_187_cov_2.992754_g235972_i0 PRJNA641707 238635 187 2.992754 5.59644998 Thermoplasmatota archaeon 2806419 Archaea Archaea 45.8 0.0014   NR MDG6226222.1 2806419 g235972 i0 60 0.978609625668449 30 12 48.1 0 96 185 402 431 MDG6226222.1 AMP-binding protein [Thermoplasmatota archaeon] diamond 183 45.8 1 Archaea   Methanobacteriati Thermoplasmatota         Thermoplasmatota archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;