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contig_metadata

29 rows where bioproject = "PRJNA641707", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 29 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 29 ✖

bioproject 1

  • PRJNA641707 · 29 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
616034 616034 PRJNA641707_P_NODE_329861_length_154_cov_5.047619_g327198_i0 PRJNA641707 329861 154 5.047619 7.77333326 Methanobrevibacter acididurans 120963 Archaea Archaea 135 1.2200000000000002e-27   NTclustered gi|2871247231|gb|CP166991.1| 120963 g327198 i0 85.507 0.896103896103896 138 11 84 6 1 130 1347421 1347557 Methanobrevibacter acididurans strain DSM 15163 chromosome, complete genome blastn 138 135 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter acididurans
1157094 1157094 PRJNA641707_P_NODE_238121_length_187_cov_4.826087_g235458_i0 PRJNA641707 238121 187 4.826087 9.02478269 Methanobrevibacter 2172 Archaea Archaea 322 1.1e-83   NTclustered gi|968564921|gb|CP011266.1| 230361 g235458 i0 98.361 87.2245989304813 183 3 98 0 4 186 542510 542692 Methanobrevibacter millerae strain SM9, complete genome blastn 16311 322 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter millerae
3164161 3164161 PRJNA641707_P_NODE_211443_length_195_cov_6.547945_g208780_i0 PRJNA641707 211443 195 6.547945 12.76849275 Methanosphaera stadtmanae 2317 Archaea Archaea 303 4.21e-78   NTclustered gi|470477274|ref|NR_076373.1| 2317 g208780 i0 94.872 12.7538461538462 195 9 99 1 2 195 811 1005 Methanosphaera stadtmanae strain MCB-3 23S ribosomal RNA gene, complete sequence blastn 2487 303 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera stadtmanae
5715774 5715774 PRJNA641707_P_NODE_161485_length_211_cov_2.339506_g158822_i0 PRJNA641707 161485 211 2.339506 4.93635766 Methanobrevibacter sp. YE315 1609968 Archaea Archaea 342 9.819999999999999e-90   NTclustered gi|985614202|gb|CP010834.1| 1609968 g158822 i0 96.602 34.9099526066351 206 7 98 0 1 206 495110 494905 Methanobrevibacter sp. YE315, complete genome blastn 7366 342 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. YE315
5718125 5718125 PRJNA641707_P_NODE_265865_length_176_cov_2.370079_g263202_i0 PRJNA641707 265865 176 2.370079 4.17133904 Methanobacterium aridiramus 2584467 Archaea Archaea 278 2.25e-70   NTclustered gi|2523005876|gb|CP040735.1| 2584467 g263202 i0 96.429 77.5568181818182 168 6 95 0 1 168 1374247 1374080 Methanobacterium aridiramus strain CWC-01 chromosome, complete genome blastn 13650 278 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium aridiramus
5719216 5719216 PRJNA641707_P_NODE_310645_length_161_cov_5.991071_g307982_i0 PRJNA641707 310645 161 5.991071 9.64562431 Methanobrevibacter millerae 230361 Archaea Archaea 254 3.42e-63   NTclustered gi|968564921|gb|CP011266.1| 230361 g307982 i0 96.154 18.1055900621118 156 4 97 1 1 156 541517 541364 Methanobrevibacter millerae strain SM9, complete genome blastn 2915 254 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter millerae
5720990 5720990 PRJNA641707_P_NODE_87785_length_246_cov_6.137056_g85122_i0 PRJNA641707 87785 246 6.137056 15.09715776 uncultured Methanobacterium sp. 176306 Archaea Archaea 180 9.77e-41   NTclustered gi|2621703503|emb|OY762552.1| 176306 g85122 i0 99 52.020325203252 100 1 81 0 145 244 1860698 1860797 MAG: uncultured Methanobacterium sp. isolate 3f2017ab-9e69-417f-80a5-32741c1572f8 genome assembly, chromosome: 1 blastn 12797 180 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium uncultured Methanobacterium sp.
6261435 6261435 PRJNA641707_P_NODE_334245_length_153_cov_2.423077_g331582_i0 PRJNA641707 334245 153 2.423077 3.70730781 Methanobrevibacter 2172 Archaea Archaea 274 2.4599999999999997e-69   NTclustered gi|2791693311|gb|CP144200.1| 2173 g331582 i0 99.338 105.614379084967 151 1 99 0 1 151 1282740 1282590 Methanobrevibacter smithii strain GRAZ-2 chromosome, complete genome blastn 16159 274 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
6261471 6261471 PRJNA641707_P_NODE_339785_length_150_cov_4.970297_g337122_i0 PRJNA641707 339785 150 4.970297 7.4554455 Methanobacterium 2160 Archaea Archaea 263 5.18e-66   NTclustered gi|584298061|gb|KF882000.1| 483896 g337122 i0 98.649 87.1466666666667 148 2 99 0 1 148 1336 1189 Methanobacterium kanagiense strain 169 23S ribosomal RNA gene, partial sequence blastn 13072 263 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium kanagiense
8810785 8810785 PRJNA641707_P_NODE_43187_length_331_cov_4.031915_g40542_i0 PRJNA641707 43187 331 4.031915 13.34563865 Methanobacterium 2160 Archaea Archaea 180 1.3699999999999996e-40   NTclustered gi|584298061|gb|KF882000.1| 483896 g40542 i0 99 88.6978851963746 100 1 86 0 1 100 1225 1126 Methanobacterium kanagiense strain 169 23S ribosomal RNA gene, partial sequence blastn 29359 180 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium kanagiense
9539383 9539383 PRJNA641707_P_NODE_101508_length_246_cov_4.020305_g98845_i0 PRJNA641707 101508 246 4.020305 9.8899503 Methanocaldococcus lauensis 2546128 Archaea Archaea 60.2 1.33e-4   NTclustered gi|2045108028|emb|LR792634.1| 2546128 g98845 i0 97.143 0.142276422764228 35 1 14 0 48 82 372 338 Methanocaldococcus sp. SG1 genome assembly, chromosome: I blastn 35 60.2 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus lauensis
10084992 10084992 PRJNA641707_P_NODE_163548_length_206_cov_8.458599_g160885_i0 PRJNA641707 163548 206 8.458599 17.42471394 Methanobrevibacter 2172 Archaea Archaea 379 7.269999999999998e-101   NTclustered gi|1294447101|gb|CP017803.1| 2173 g160885 i0 100 102.834951456311 205 0 99 0 1 205 266327 266531 Methanobrevibacter smithii strain KB11 chromosome, complete genome blastn 21184 379 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
11361412 11361412 PRJNA641707_P_NODE_55809_length_286_cov_9.075949_g53148_i0 PRJNA641707 55809 286 9.075949 25.95721414 Methanobacterium 2160 Archaea Archaea 512 1.01e-140   NTclustered gi|584298062|gb|KF882001.1| 2171 g53148 i0 100 131.132867132867 277 0 97 0 5 281 1081 805 Methanobacterium palustre strain F 23S ribosomal RNA gene, partial sequence blastn 37504 512 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium palustre
13910329 13910329 PRJNA641707_P_NODE_154531_length_228_cov_7.234637_g151868_i0 PRJNA641707 154531 228 7.234637 16.49497236 Methanobrevibacter 2172 Archaea Archaea 405 1.35e-108   NTclustered gi|2791693311|gb|CP144200.1| 2173 g151868 i0 99.55 107.447368421053 222 1 97 0 3 224 1283877 1283656 Methanobrevibacter smithii strain GRAZ-2 chromosome, complete genome blastn 24498 405 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
15916737 15916737 PRJNA641707_P_NODE_236433_length_188_cov_1.151079_g233770_i0 PRJNA641707 236433 188 1.151079 2.16402852 Methanobrevibacter sp. YE315 1609968 Archaea Archaea 250 5.3199999999999995e-62   NTclustered gi|985614202|gb|CP010834.1| 1609968 g233770 i0 91.758 110.260638297872 182 11 96 4 7 186 495091 495270 Methanobrevibacter sp. YE315, complete genome blastn 20729 250 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. YE315
16460671 16460671 PRJNA641707_P_NODE_43453_length_330_cov_2.854093_g40807_i0 PRJNA641707 43453 330 2.854093 9.4185069 root 1 Root_unresolved Root_unresolved 342 1.65e-89   NTclustered gi|110180137|gb|DQ649323.1| 2162 g40807 i0 100 64.6151515151515 185 0 56 0 146 330 63 247 Methanobacterium formicicum strain 14 16S ribosomal RNA gene, partial sequence blastn 21323 342 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum
21017962 21017962 PRJNA641707_P_NODE_307777_length_162_cov_3.876106_g305114_i0 PRJNA641707 307777 162 3.876106 6.27929172 Methanothermococcus okinawensis 155863 Archaea Archaea 54.7 0.004   NTclustered gi|334855522|gb|CP002792.1| 647113 g305114 i0 96.97 0.203703703703704 33 0 20 1 123 154 1605897 1605865 Methanothermococcus okinawensis IH1, complete genome blastn 33 54.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanococcaceae Methanothermococcus Methanothermococcus okinawensis
21558976 21558976 PRJNA641707_P_NODE_235537_length_188_cov_5.014388_g232874_i0 PRJNA641707 235537 188 5.014388 9.42704944 root 1 Root_unresolved Root_unresolved 339 1.1e-88   NTclustered gi|2959923|emb|AJ001711.1| 66852 g232874 i0 99.462 98.936170212766 186 1 99 0 3 188 185 370 Methanobrevibacter sp. partial SSU rRNA, phylotype 3 blastn 18600 339 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
22292283 22292283 PRJNA641707_P_NODE_294238_length_166_cov_1.410256_g291575_i0 PRJNA641707 294238 166 1.410256 2.34102496 Methanobrevibacter millerae 230361 Archaea Archaea 215 1.68e-51   NTclustered gi|968564921|gb|CP011266.1| 230361 g291575 i0 90.683 9.57228915662651 161 15 97 0 1 161 2381124 2381284 Methanobrevibacter millerae strain SM9, complete genome blastn 1589 215 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter millerae
22834884 22834884 PRJNA641707_P_NODE_294178_length_166_cov_1.521368_g291515_i0 PRJNA641707 294178 166 1.521368 2.52547088 Methanobrevibacter 2172 Archaea Archaea 281 1.63e-71   NTclustered gi|1294447101|gb|CP017803.1| 2173 g291515 i0 98.137 33.9457831325301 161 3 97 0 1 161 264941 264781 Methanobrevibacter smithii strain KB11 chromosome, complete genome blastn 5635 281 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
23564709 23564709 PRJNA641707_P_NODE_157959_length_219_cov_10.964706_g155296_i0 PRJNA641707 157959 219 10.964706 24.01270614 Methanobrevibacter millerae 230361 Archaea Archaea 387 4.679999999999998e-103   NTclustered gi|968564921|gb|CP011266.1| 230361 g155296 i0 99.07 141.319634703196 215 2 98 0 5 219 543277 543491 Methanobrevibacter millerae strain SM9, complete genome blastn 30949 387 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter millerae
23566853 23566853 PRJNA641707_P_NODE_250459_length_182_cov_4.022556_g247796_i0 PRJNA641707 250459 182 4.022556 7.32105192 Methanobacterium sp. BAmetb5 2025351 Archaea Archaea 318 1.38e-82   NTclustered gi|1473089901|gb|CP022706.1| 2025351 g247796 i0 98.876 142.296703296703 178 2 98 0 5 182 1833436 1833613 MAG: Methanobacterium sp. BAmetb5 chromosome, complete genome blastn 25898 318 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp. BAmetb5
24109786 24109786 PRJNA641707_P_NODE_44859_length_324_cov_4.683636_g42208_i0 PRJNA641707 44859 324 4.683636 15.17498064 Methanobrevibacter 2172 Archaea Archaea 586 6.75e-163   NTclustered gi|1294447101|gb|CP017803.1| 2173 g42208 i0 99.688 136.404320987654 320 1 99 0 5 324 264990 265309 Methanobrevibacter smithii strain KB11 chromosome, complete genome blastn 44195 586 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
24837563 24837563 PRJNA641707_P_NODE_119500_length_245_cov_8.500000_g116837_i0 PRJNA641707 119500 245 8.5 20.825 Methanococcus maripaludis 39152 Archaea Archaea 65.8 2.84e-6   NTclustered gi|132662671|gb|CP000609.1| 402880 g116837 i0 85.714 0.257142857142857 63 7 26 2 180 242 1058881 1058821 Methanococcus maripaludis C5, complete genome blastn 63 65.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanococcaceae Methanococcus Methanococcus maripaludis
24838362 24838362 PRJNA641707_P_NODE_154980_length_227_cov_6.584270_g152317_i0 PRJNA641707 154980 227 6.58427 14.9462929 Methanobacterium petrolearium 710190 Archaea Archaea 398 2.25e-106   NTclustered gi|584298063|gb|KF882002.1| 710190 g152317 i0 99.095 76.9823788546256 221 2 97 0 7 227 1388 1608 Methanobacterium petrolearium strain Mic5c12 23S ribosomal RNA gene, partial sequence blastn 17475 398 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium petrolearium
24840245 24840245 PRJNA641707_P_NODE_235840_length_188_cov_4.057554_g233177_i0 PRJNA641707 235840 188 4.057554 7.62820152 Methanobrevibacter sp. YE315 1609968 Archaea Archaea 294 2.42e-75   NTclustered gi|985614202|gb|CP010834.1| 1609968 g233177 i0 95.628 141.75 183 8 97 0 6 188 495988 496170 Methanobrevibacter sp. YE315, complete genome blastn 26649 294 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. YE315
31610627 31610627 PRJNA641707_P_NODE_257316_length_179_cov_5.161538_g254653_i0 PRJNA641707 257316 179 5.161538 9.23915302 root 1 Root_unresolved Root_unresolved 65.9 1.1e-10   NR WP_407423815.1 66852 g254653 i0 68.9 6.7877094972067 45 13 75.4 1 136 2 528 571 WP_407423815.1 ABC transporter ATP-binding protein [Methanobrevibacter sp.] diamond 1215 65.9 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
31673654 31673654 PRJNA641707_P_NODE_228117_length_191_cov_1.873239_g225454_i0 PRJNA641707 228117 191 1.873239 3.57788649 root 1 Root_unresolved Root_unresolved 48.1 2.32e-4   NR WP_295592605.1 253161 g225454 i0 36.4 4.77486910994764 55 35 86.4 0 14 178 257 311 WP_295592605.1 tetratricopeptide repeat protein [uncultured Methanobrevibacter sp.] diamond 912 48.1 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.
32167714 32167714 PRJNA641707_P_NODE_139978_length_242_cov_3.145078_g137315_i0 PRJNA641707 139978 242 3.145078 7.61108876 Methanobacterium sp. 2164 Archaea Archaea 60.8 4.95e-9   NR MDD1775564.1 2164 g137315 i0 72.7 1.63636363636364 33 9 40.9 0 104 6 136 168 MDD1775564.1 cysteine peptidase family C39 domain-containing protein [Methanobacterium sp.] diamond 396 60.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;