RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA641707", tax_clade = "FCB group" and tax_phylum = "Candidatus Hydrogenedentota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Hydrogenedentota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA641707 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12092990 12092990 PRJNA641707_P_NODE_221570_length_193_cov_2.381944_g218907_i0 PRJNA641707 221570 193 2.381944 4.59715192 uncultured Hydrogenedentota bacterium 214883 Bacteria Bacteria 283 5.42e-72   NTclustered gi|26000473|gb|AY150902.1| 214883 g218907 i0 94.565 96.0880829015544 184 9 95 1 5 188 276 94 Uncultured candidate division NKB19 bacterium clone WYO5c 16S ribosomal RNA gene, partial sequence blastn 18545 283 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         uncultured Hydrogenedentota bacterium
27188193 27188193 PRJNA641707_P_NODE_73202_length_247_cov_3.535354_g70539_i0 PRJNA641707 73202 247 3.535354 8.73232438 Pseudomonadati 3379134 Bacteria Bacteria 52 2.24e-6   NR OQB32042.1 1852848 g70539 i0 82.1 0.680161943319838 28 5 34 0 232 149 1 28 OQB32042.1 MAG: RNA recognition motif [Candidatus Hydrogenedentes bacterium ADurb.Bin170] diamond 168 52.4 0.99236641221374 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentes bacterium ADurb.Bin170
27334266 27334266 PRJNA641707_P_NODE_77123_length_246_cov_10.406091_g74460_i0 PRJNA641707 77123 246 10.406091 25.59898386 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 43.5 0.0195   NR MBP8131825.1 2030809 g74460 i0 54.5 0.402439024390244 33 15 40.2 0 245 147 306 338 MBP8131825.1 group II intron reverse transcriptase domain-containing protein [Candidatus Hydrogenedentota bacterium] diamond 99 43.5 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;