RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA640350", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA640350 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16458386 16458386 PRJNA640350_P_NODE_21233_length_212_cov_9.234973_g21072_i0 PRJNA640350 21233 212 9.234973 19.57814276 root 1 Root_unresolved Root_unresolved 337 4.599999999999998e-88   NTclustered gi|1958638505|gb|MW498314.1| 2100 g21072 i0 95.694 99.5707547169811 209 9 99 0 4 212 2308 2516 Mesomycoplasma hyorhinis strain MycSu128 23S ribosomal RNA gene, partial sequence blastn 21109 337 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
21557458 21557458 PRJNA640350_P_NODE_1657_length_649_cov_4.062903_g1545_i0 PRJNA640350 1657 649 4.062903 26.36824047 Mollicutes 31969 Bacteria Bacteria 331 7.4e-86   NTclustered gi|281186773|gb|GU227378.1| 2100 g1545 i0 98.919 39.788906009245 185 2 39 0 6 190 1005 1189 Mycoplasma hyorhinis strain USP36P 16S ribosomal RNA gene, partial sequence blastn 25823 331 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
21557695 21557695 PRJNA640350_P_NODE_40797_length_150_cov_6.892562_g40636_i0 PRJNA640350 40797 150 6.892562 10.338843 Mollicutes 31969 Bacteria Bacteria 272 8.609999999999998e-69   NTclustered gi|1052538474|gb|CP016817.1| 2100 g40636 i0 100 98.98 147 0 98 0 1 147 19285 19431 Mesomycoplasma hyorhinis strain MDBK-IPV, complete genome blastn 14847 272 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;